CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G078010.1	Barley	cytosol	29.75	77.21
CDY25761	Canola	cytosol	72.8	72.19
HORVU1Hr1G008160.1	Barley	cytosol	30.59	71.05
HORVU3Hr1G113750.1	Barley	cytosol	29.18	66.45
CDY04768	Canola	cytosol	65.16	64.61
CDY21400	Canola	cytosol	65.16	64.61
HORVU3Hr1G054660.1	Barley	cytosol	44.19	63.93
HORVU6Hr1G023630.1	Barley	cytosol	43.34	63.75
HORVU0Hr1G018470.1	Barley	cytosol	43.63	63.37
HORVU2Hr1G056160.5	Barley	cytosol	29.75	62.5
HORVU0Hr1G025410.1	Barley	cytosol	50.99	59.8
HORVU4Hr1G048730.1	Barley	cytosol	50.99	59.6
TraesCS2A01G504600.1	Wheat	cytosol	56.37	54.67
TraesCS2D01G505300.1	Wheat	golgi, unclear	56.37	54.67
Os04t0654700-02	Rice	cytosol	55.52	54.44
HORVU2Hr1G067660.1	Barley	cytosol, peroxisome	10.76	54.29
Zm00001d002027_P002	Maize	extracellular	54.67	53.31
KXG27287	Sorghum	cytosol	54.67	51.74
VIT_16s0100g00150.t01	Wine grape	cytosol, extracellular, plastid	8.22	43.28
HORVU2Hr1G112000.1	Barley	cytosol	48.44	42.96
HORVU3Hr1G021300.1	Barley	cytosol, plastid	17.28	36.97
HORVU4Hr1G047410.2	Barley	cytosol, mitochondrion, peroxisome	25.78	35.97
CDY59032	Canola	cytosol	16.71	25.11
CDY46961	Canola	cytosol	21.53	24.68
CDY40791	Canola	cytosol	21.53	24.68
CDY16857	Canola	cytosol	21.25	24.35
CDX88035	Canola	cytosol	21.25	24.35
CDX87167	Canola	cytosol	21.25	24.35
CDX80372	Canola	extracellular	21.25	24.35

Protein Annotations

EnsemblPlants:CDY12502	EnsemblPlantsGene:GSBRNA2T00061820001	Gene3D:3.40.140.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN	PANTHER:PTHR10410	PANTHER:PTHR10410:SF14	PFAM:PF01398
PFscan:PS50249	ProteinID:CDY12502	ProteinID:CDY12502.1	SEG:seg	SMART:SM00232	SUPFAM:SSF102712
UniParc:UPI0004EE677C	UniProt:A0A078FHQ3	MapMan:19.2.3.3.1.5	:	:	:

Description

BnaC07g13420DBnaC07g13420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHQ3]

Coordinates

chrLK032023:+:436515..438116

Molecular Weight (calculated)

40382.9 Da

IEP (calculated)

8.820

GRAVY (calculated)

-0.140

Length

353 amino acids

Sequence
(BLAST)

001: MESSSTIARK TWELENNILT VKLPADSSSD NIFHYDGAAH AKVLKEKTWA TNPNYFKRVQ ISALALLKMV VHARSGGTIE IWVLCRGKQM AIRSLLWTLL
101: LCLLKELRLG LMLRPMRMST WLNIHQTNKL AGRLENVVGW YHLHPGYGCW LSGIDVSTQM LNQQYQEPFL AVVIDPTRTV SAGKVEIGAF RTYPEGHKIS
201: DDHVSEYQTI PLNKIEDFGV HCKQYYSLDI TYFKSSLDSH LLELLWNKYW VNTLSSSPLL GNGDYIAGQI SDLAGKLDQA ESQLVQSWFG GKKASLHKKK
301: KVCLNGYFKF SMFLDCLRFW TMNLNSSTCH LLNFFLIYEF CWNGKLYKDG ESV

Best Arabidopsis Sequence Match ( AT1G22920.1 )
(BLAST)

001: MEGSSSAIAR KTWELENNIL PVEPTDSASD SIFHYDDASQ AKIQQEKPWA SDPNYFKRVH ISALALLKMV VHARSGGTIE IMGLMQGKTE GDTIIVMDAF
101: ALPVEGTETR VNAQSDAYEY MVEYSQTSKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQM LNQQYQEPFL AVVIDPTRTV SAGKVEIGAF RTYPEGHKIS
201: DDHVSEYQTI PLNKIEDFGV HCKQYYSLDI TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESQLANSRYG GIAPAGHQRR
301: KEDEPQLAKI TRDSAKITVE QVHGLMSQVI KDILFNSARQ SKKSADDSSD PEPMITS

Arabidopsis Description

CSN5ACOP9 signalosome complex subunit 5a [Source:UniProtKB/Swiss-Prot;Acc:Q8LAZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.