Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G078010.1 | Barley | cytosol | 32.81 | 61.03 |
| HORVU1Hr1G008160.1 | Barley | cytosol | 32.81 | 54.61 |
| HORVU3Hr1G113750.1 | Barley | cytosol | 30.83 | 50.32 |
| HORVU2Hr1G056160.5 | Barley | cytosol | 32.41 | 48.81 |
| VIT_16s0100g00150.t01 | Wine grape | cytosol, extracellular, plastid | 11.86 | 44.78 |
| HORVU3Hr1G054660.1 | Barley | cytosol | 39.53 | 40.98 |
| HORVU0Hr1G018470.1 | Barley | cytosol | 38.34 | 39.92 |
| HORVU6Hr1G023630.1 | Barley | cytosol | 37.15 | 39.17 |
| HORVU0Hr1G025410.1 | Barley | cytosol | 37.55 | 31.56 |
| HORVU4Hr1G048730.1 | Barley | cytosol | 37.55 | 31.46 |
| Zm00001d002027_P002 | Maize | extracellular | 38.74 | 27.07 |
| Os04t0654700-02 | Rice | cytosol | 38.34 | 26.94 |
| AT1G71230.1 | Thale cress | cytosol | 37.55 | 26.54 |
| KXG27287 | Sorghum | cytosol | 38.74 | 26.27 |
| GSMUA_Achr10P... | Banana | cytosol | 37.94 | 26.09 |
| CDY12502 | Canola | cytosol | 35.97 | 25.78 |
| Bra012351.1-P | Field mustard | cytosol | 35.97 | 25.56 |
| KRH61926 | Soybean | nucleus | 37.55 | 25.4 |
| Solyc11g017300.1.1 | Tomato | cytosol | 36.76 | 25.34 |
| PGSC0003DMT400069203 | Potato | cytosol | 36.76 | 25.34 |
| Bra024548.1-P | Field mustard | cytosol | 35.57 | 25.28 |
| AT1G22920.1 | Thale cress | cytosol | 35.57 | 25.21 |
| Solyc06g073150.2.1 | Tomato | cytosol | 36.36 | 25.07 |
| PGSC0003DMT400023896 | Potato | cytosol | 36.36 | 25.07 |
| HORVU2Hr1G112000.1 | Barley | cytosol | 38.34 | 24.37 |
| KRH52586 | Soybean | cytosol, nucleus | 37.55 | 23.23 |
| HORVU3Hr1G021300.1 | Barley | cytosol, plastid | 13.44 | 20.61 |
| HORVU3Hr1G037790.1 | Barley | nucleus, plastid | 17.39 | 12.15 |
| HORVU7Hr1G096410.6 | Barley | cytosol, plastid | 15.81 | 12.01 |
| HORVU1Hr1G058180.1 | Barley | plastid | 16.21 | 11.68 |
| HORVU6Hr1G058050.2 | Barley | cytosol | 5.53 | 8.09 |
| HORVU1Hr1G017260.3 | Barley | cytosol | 3.56 | 7.96 |
| HORVU2Hr1G067660.1 | Barley | cytosol, peroxisome | 0.79 | 2.86 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G047410.2 | EnsemblPlantsGene:HORVU4Hr1G047410 | Gene3D:3.40.140.10 | PANTHER:PTHR10410 | PANTHER:PTHR10410:SF14 | SEG:seg |
| UniParc:UPI000B460CBE | UniProt:A0A287NY84 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:380476251..380478147
Molecular Weight (calculated)
28180.4 Da
IEP (calculated)
9.363
GRAVY (calculated)
-0.681
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: LPRSQRRPEQ RLLHQRPTPP STGSTGAPPQ PRPAPHRSVD RRPVEPAKEG LPRPHPPPCG RMATPVAHTS SSRWSSTPAP TAPSRSWASS KATPSSSWTP
101: SRSPSRAPRP GPHLITGNGV GFKPDILDMD IMEKVKGEDA VKMAQQLSLQ EGLLVSCIDV STQILNQQFQ EPFLAVVIDP TRTVFANKVD IGAFRTYPKD
201: YMPPDEPVSE YQTIPLNKIE DFDVHCKQYY SLDITYFKSS LDSHLPDLLW NKY
101: SRSPSRAPRP GPHLITGNGV GFKPDILDMD IMEKVKGEDA VKMAQQLSLQ EGLLVSCIDV STQILNQQFQ EPFLAVVIDP TRTVFANKVD IGAFRTYPKD
201: YMPPDEPVSE YQTIPLNKIE DFDVHCKQYY SLDITYFKSS LDSHLPDLLW NKY
001: MEGSSSTIAR KTWELENSIL TVDSPDSTSD NIFYYDDTSQ TRFQQEKPWE NDPHYFKRVK ISALALLKMV VHARSGGTIE IMGLMQGKTD GDTIIVMDAF
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY
Arabidopsis Description
CSN5BCOP9 signalosome complex subunit 5b [Source:UniProtKB/Swiss-Prot;Acc:Q9FVU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.