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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:
  • plastid 2
  • cytosol 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU4Hr1G001850.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G40940.1 HORVU4Hr1G001850.1 AT5G03730.1 9560288
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G001600.1 Wheat plasma membrane 91.94 97.78
TraesCS5A01G002600.1 Wheat cytosol, plasma membrane, vacuole 92.09 97.47
TraesCS5D01G002600.1 Wheat cytosol, plasma membrane, vacuole 91.64 97.0
HORVU6Hr1G045040.2 Barley cytosol 46.57 88.39
HORVU5Hr1G119650.1 Barley endoplasmic reticulum 44.78 84.03
GSMUA_Achr11P... Banana cytosol 76.12 80.31
GSMUA_Achr11P... Banana cytosol 42.54 77.45
HORVU4Hr1G006260.4 Barley plastid 73.73 76.95
GSMUA_Achr5P21290_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 65.07 75.56
VIT_07s0005g00850.t01 Wine grape cytosol 71.49 75.31
KRH68220 Soybean cytosol 67.76 71.38
KRG96477 Soybean cytosol 67.76 71.38
CDX80113 Canola plasma membrane 64.78 70.8
Bra004449.1-P Field mustard plasma membrane 64.03 70.21
AT2G40940.1 Thale cress cytosol, nucleus, plasma membrane 63.88 69.82
CDY63851 Canola plasma membrane 64.63 69.5
HORVU1Hr1G022550.1 Barley cytosol, golgi, plasma membrane 65.22 68.5
Solyc09g075440.2.1 Tomato plasma membrane 64.63 68.19
PGSC0003DMT400081399 Potato cytosol, plasma membrane, vacuole 64.33 67.87
HORVU6Hr1G080170.1 Barley plasma membrane 11.49 40.96
HORVU0Hr1G001750.2 Barley endoplasmic reticulum 35.52 30.63
HORVU2Hr1G000030.1 Barley plasma membrane 35.37 30.58
HORVU6Hr1G091700.6 Barley cytosol, mitochondrion, plasma membrane 35.52 28.95
HORVU6Hr1G071860.2 Barley plasma membrane 28.66 26.59
HORVU6Hr1G080180.1 Barley cytosol 16.87 22.47
HORVU2Hr1G106760.1 Barley cytosol 14.48 15.52
HORVU4Hr1G008210.4 Barley cytosol 19.85 13.25
HORVU6Hr1G077070.5 Barley mitochondrion 20.15 12.87
HORVU3Hr1G094870.10 Barley plasma membrane 19.55 12.51
HORVU7Hr1G030040.2 Barley extracellular 12.69 8.21
Protein Annotations
Gene3D:1.10.287.130MapMan:11.5.2.1Gene3D:3.30.450.40Gene3D:3.30.565.10UniProt:A0A287Q5Z3InterPro:GAF
InterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0003674GO:GO:0003824GO:GO:0004871
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006464
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0016772GO:GO:0019538
GO:GO:0023014GO:GO:0038023InterPro:HATPase_CInterPro:HATPase_C_sfEnsemblPlantsGene:HORVU5Hr1G000590EnsemblPlants:HORVU5Hr1G000590.2
InterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:His_kinase_domInterPro:IPR005467InterPro:IPR029016InterPro:IPR036890
PFAM:PF00512PFAM:PF01590PFAM:PF02518PRINTS:PR00344PFscan:PS50109PANTHER:PTHR24423
PANTHER:PTHR24423:SF615SMART:SM00065SMART:SM00387SMART:SM00388SUPFAM:SSF47384SUPFAM:SSF55781
SUPFAM:SSF55874InterPro:Sig_transdc_His_kin-like_CTMHMM:TMhelixUniParc:UPI000B47BEE1SEG:seg:
Description
No Description!
Coordinates
chrchr5H:-:2257401..2264720
Molecular Weight (calculated)
74451.8 Da
IEP (calculated)
9.078
GRAVY (calculated)
0.013
Length
670 amino acids
Sequence
(BLAST)
001: SQPKIWTSRP ITGNKCRPGR RRRRLSSKKK GTPASRLTSE MEGCDCIEPF WPTDDLLIKY QYISDFFIAL AYFSIPLELI YFVKKSSFFP YRWVLIQFGA
101: FIVLCGATHL INLWTFTMHT KTVAIVMTVA KVSTAVVSCA TALMLVHIIP DLLSVKTREL FLKKKADELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH
201: TILKTTLVEL GRTLGLEECA LWMPSRSGSS LQLTHTLRHQ IPAGSSVQIN LPVVNQVFSS NRAIIVPHTS PLARIRPVQG RYVPPEVAAV RVPLLHLSNF
301: QINDWPELSA KSYAIMVLML PSDSARKWHV HELELVEVVA DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARRDAETA IRARNDFLAV MNHEMRTPMN
401: AIIALSSLLL ETELTPEQRL MVETVLKSSN LLATLINDVL DLSKLEDGSF ELDISAFNLH AVFKEVMSFV KPIAAIKKLS VSAMLSPDLP LSAIGDEKRL
501: MQTVLNVCGN AVKFTKEGHI SLLASVVKSD ALREFRSTDF HPAATDGHFY VKVQVKDTGC GISPQDLSHV FTKFAHTQSG GNQGYNGSGL GLAICKRFVG
601: LMGGHIWLES DGAGKGCTAT FVVKLGACDT YQQPAVPLVW PSHAGSDPSG PARREERGLS NLKPRYQRSI
Best Arabidopsis Sequence Match ( AT1G66340.1 )
(BLAST)
001: MEVCNCIEPQ WPADELLMKY QYISDFFIAI AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRHQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYMLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETILKSSN LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD TRAADFFVVP
501: TGSHFYLRVK VKDSGAGINP QDIPKIFTKF AQTQSLATRS SGGSGLGLAI SKRFVNLMEG NIWIESDGLG KGCTAIFDVK LGISERSNES KQSGIPKVPA
601: IPRHSNFTGL KVLVMDENGV SRMVTKGLLV HLGCEVTTVS SNEECLRVVS HEHKVVFMDV CMPGVENYQI ALRIHEKFTK QRHQRPLLVA LSGNTDKSTK
701: EKCMSFGLDG VLLKPVSLDN IRDVLSDLLE PRVLYEGM
Arabidopsis Description
ETR1Ethylene receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P49333]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.