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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70289
CDX80884
CDY07498
CDY10360
CDY11267
CDY49629
CDY49633
CDY66567

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G40940.1 CDY07498 AT1G66340.1 18577522
AT2G40940.1 CDY49629 AT1G66340.1 18577522
AT2G40940.1 CDY49633 AT1G66340.1 18577522
AT2G40940.1 CDY66567 AT1G66340.1 18577522
AT2G40940.1 CDX70289 AT5G03730.1 9560288
AT2G40940.1 CDX80884 AT5G03730.1 9560288
AT2G40940.1 CDY10360 AT5G03730.1 9560288
AT2G40940.1 CDY11267 AT5G03730.1 9560288
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX80113 Canola plasma membrane 95.02 96.57
AT2G40940.1 Thale cress cytosol, nucleus, plasma membrane 90.85 92.33
KRG96477 Soybean cytosol 73.84 72.33
KRH68220 Soybean cytosol 73.52 72.01
VIT_07s0005g00850.t01 Wine grape cytosol 72.07 70.6
Os05t0155200-01 Rice plasma membrane 58.43 70.27
EER91030 Sorghum cytosol 71.11 69.76
Zm00001d033642_P001 Maize plasma membrane 70.95 69.72
HORVU6Hr1G045040.2 Barley cytosol 39.33 69.41
TraesCS4A01G344200.1 Wheat cytosol, golgi, plasma membrane 34.03 69.28
Zm00001d013486_P001 Maize plasma membrane 70.31 69.09
TraesCS5B01G001600.1 Wheat plasma membrane 69.66 68.89
TraesCS5A01G002600.1 Wheat cytosol, plasma membrane, vacuole 69.82 68.72
Os03t0701700-02 Rice cytosol, plasma membrane, vacuole 70.14 68.71
GSMUA_Achr11P... Banana cytosol 69.82 68.5
GSMUA_Achr11P... Banana cytosol 40.45 68.48
TraesCS5D01G002600.1 Wheat cytosol, plasma membrane, vacuole 69.5 68.4
TraesCS4A01G274300.1 Wheat cytosol, golgi, plasma membrane 69.66 68.35
TraesCS4B01G039300.1 Wheat cytosol, golgi, plasma membrane 69.66 68.35
TraesCS4D01G036400.2 Wheat cytosol, golgi, plasma membrane 69.5 68.19
HORVU5Hr1G119650.1 Barley endoplasmic reticulum 38.68 67.51
Solyc09g075440.2.1 Tomato plasma membrane 67.9 66.61
PGSC0003DMT400081399 Potato cytosol, plasma membrane, vacuole 67.74 66.46
TraesCS5B01G527300.1 Wheat cytosol, golgi, plasma membrane 39.81 66.13
GSMUA_Achr5P21290_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 61.0 65.86
HORVU5Hr1G000590.2 Barley cytosol, mitochondrion, plastid 69.5 64.63
EES19059 Sorghum plasma membrane 65.49 64.56
Zm00001d037604_P001 Maize plastid 64.53 63.91
GSMUA_Achr5P00120_001 Banana cytosol 36.44 63.41
Zm00001d028026_P001 Maize endoplasmic reticulum, extracellular 25.04 63.16
HORVU1Hr1G022550.1 Barley cytosol, golgi, plasma membrane 64.21 62.7
TraesCS1D01G105600.1 Wheat cytosol, golgi, plasma membrane 64.04 62.44
TraesCS1A01G096600.1 Wheat cytosol, golgi, plasma membrane 63.88 62.38
TraesCS1B01G127000.1 Wheat cytosol, golgi, plasma membrane 63.88 62.38
HORVU4Hr1G006260.4 Barley plastid 61.64 59.81
CDY07498 Canola cytosol 66.45 56.25
CDY49633 Canola cytosol 66.29 56.19
Zm00001d043247_P001 Maize nucleus 19.1 35.74
CDY67999 Canola plasma membrane 30.82 31.02
CDY70681 Canola endoplasmic reticulum 30.5 30.79
Zm00001d013338_P002 Maize cytosol 18.46 30.75
CDX86641 Canola endoplasmic reticulum 29.21 30.59
CDY70443 Canola plasma membrane 36.92 29.49
CDY35503 Canola plasma membrane 36.76 29.4
CDY30004 Canola plasma membrane 34.99 28.46
CDX78398 Canola cytosol 16.21 16.08
CDX90318 Canola cytosol 7.54 15.26
CDX97049 Canola nucleus 18.14 12.61
CDX69808 Canola nucleus 18.14 12.58
CDY03909 Canola endoplasmic reticulum, golgi, plasma membrane 19.58 12.19
CDY67688 Canola nucleus 17.82 12.18
CDY40112 Canola nucleus 17.82 12.12
CDY03101 Canola cytosol, peroxisome, plasma membrane 20.39 12.07
CDY17631 Canola cytosol, peroxisome, plasma membrane 20.39 12.07
CDY15717 Canola endoplasmic reticulum, golgi, plasma membrane 19.74 12.05
CDX93074 Canola plasma membrane 20.22 11.49
CDY50037 Canola endoplasmic reticulum, golgi, plasma membrane 20.22 11.46
CDY15498 Canola plasma membrane 30.34 11.05
CDY47297 Canola plasma membrane 20.06 10.88
CDX74635 Canola cytosol, golgi, plasma membrane 19.74 10.71
CDY20843 Canola nucleus 18.14 9.47
CDY24380 Canola nucleus 18.14 9.46
CDX78397 Canola cytosol 5.78 9.35
CDY21123 Canola cytosol 4.49 9.33
CDY01193 Canola endoplasmic reticulum, golgi, plasma membrane 15.57 9.08
CDY12735 Canola endoplasmic reticulum, golgi, plasma membrane 15.09 8.83
CDX80103 Canola endoplasmic reticulum, golgi, plasma membrane 15.25 8.54
CDY55381 Canola endoplasmic reticulum, plasma membrane, plastid 15.09 8.23
CDX70367 Canola endoplasmic reticulum, golgi 17.98 8.16
CDY66567 Canola cytosol 1.28 5.48
CDY49629 Canola cytosol 0.96 4.32
CDY03106 Canola cytosol 0.48 4.17
CDY03102 Canola cytosol 0.48 4.17
CDY64702 Canola mitochondrion 0.48 2.29
Protein Annotations
Gene3D:1.10.287.130MapMan:11.5.2.1Gene3D:3.30.450.40Gene3D:3.30.565.10GO:A0A078JEV4UniProt:A0A078JEV4
EnsemblPlants:CDY63851ProteinID:CDY63851ProteinID:CDY63851.1InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155
GO:GO:0000160GO:GO:0003674GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006464GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301
GO:GO:0016310GO:GO:0016740GO:GO:0016772GO:GO:0019538GO:GO:0023014GO:GO:0038023
EnsemblPlantsGene:GSBRNA2T00039678001InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:His_kinase_dom
InterPro:IPR005467InterPro:IPR029016InterPro:IPR036890PFAM:PF00512PFAM:PF01590PFAM:PF02518
PRINTS:PR00344PFscan:PS50109PANTHER:PTHR24423PANTHER:PTHR24423:SF615SMART:SM00065SMART:SM00387
SMART:SM00388SUPFAM:SSF47384SUPFAM:SSF55781SUPFAM:SSF55874InterPro:Sig_transdc_His_kin-like_CTMHMM:TMhelix
UniParc:UPI0004EE026BSEG:seg::::
Description
BnaC04g51810DBnaC04g51810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEV4]
Coordinates
chrLK034359:+:3945..6981
Molecular Weight (calculated)
69398.9 Da
IEP (calculated)
6.326
GRAVY (calculated)
0.149
Length
623 amino acids
Sequence
(BLAST)
001: MEPCDCFETN ANQDDLLVKY QYISDALIAL AYFSIPLELI YFVNKSAFFP YKWVLMQFGA FIILCGATHF INLWMFFNHS KVVAIVMTLA KVSCAAVSCA
101: TALMLVHIIP DLLSVKNREL FLKKKADELD REMGLILTQE ETGRHVRMLT HEIRSTLDRH TILRTTLVEL GKTLCLEECA LWMPSQSGLY LQLSHTLSHK
201: IQVGSSVPIN LPIINQLFNS AQAMHIPHTC PLAKIGPPVG RYAPPEVVSV RVPLLHLSNF QGSDWSDLSG KGYAIMVLIL PTDGARKWRD HELELVEVVA
301: DQVAVALSHA AILEESMHAR DQLMEQNFAL DKARQEAEMA VHARNDFLAV MNHEMRTPMH AIISLSSLLL ETELSPEQRV MIETILKSSN LVATLISDVL
401: DLSRLEDGSL LLENEPFSLQ AIFEEVISLI KPIASVKKLS TNLILSADLP AYAIGDEKRL MQTILNIMGN AVKFTKEGHV SIIASIMKPE SLRELPSPDF
501: YPVPSDNHFY LCVQVKDTGC GIHTQDIPFL FTKFVQPRTG AQRNHSGAGL GLALCKRFVG LMGGCIWIES EGIEKGCTAS FIIRLGICNG PGIAAVQWRY
601: VLQPNHKQDR GTGDNITMDG DFH
Best Arabidopsis Sequence Match ( AT2G40940.1 )
(BLAST)
001: MESCDCFETH VNQDDLLVKY QYISDALIAL AYFSIPLELI YFVQKSAFFP YKWVLMQFGA FIILCGATHF INLWMFFMHS KAVAIVMTIA KVSCAVVSCA
101: TALMLVHIIP DLLSVKNREL FLKKKADELD REMGLILTQE ETGRHVRMLT HGIRRTLDRH TILRTTLVEL GKTLCLEECA LWMPSQSGLY LQLSHTLSHK
201: IQVGSSVPIN LPIINELFNS AQAMHIPHSC PLAKIGPPVG RYSPPEVVSV RVPLLHLSNF QGSDWSDLSG KGYAIMVLIL PTDGARKWRD HELELVENVA
301: DQVAVALSHA AILEESMHAR DQLMEQNFAL DKARQEAEMA VHARNDFLAV MNHEMRTPMH AIISLSSLLL ETELSPEQRV MIETILKSSN LVATLISDVL
401: DLSRLEDGSL LLENEPFSLQ AIFEEVISLI KPIASVKKLS TNLILSADLP TYAIGDEKRL MQTILNIMGN AVKFTKEGYI SIIASIMKPE SLQELPSPEF
501: FPVLSDSHFY LCVQVKDTGC GIHTQDIPLL FTKFVQPRTG TQRNHSGGGL GLALCKRFVG LMGGYMWIES EGLEKGCTAS FIIRLGICNG PSSSSGSMAL
601: HLAAKSQTRP WNW
Arabidopsis Description
ERS1Ethylene response sensor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q38846]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.