Factsheet for TraesCS4A01G344200.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, golgi, plasma membrane
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G302000.1
TraesCS4B01G012100.1
TraesCS4D01G010200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40940.1	TraesCS4A01G302000.1	AT5G03730.1	9560288
AT2G40940.1	TraesCS4B01G012100.1	AT5G03730.1	9560288
AT2G40940.1	TraesCS4D01G010200.1	AT5G03730.1	9560288

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G527300.1	Wheat	cytosol, golgi, plasma membrane	95.42	77.87
HORVU5Hr1G119650.1	Barley	endoplasmic reticulum	86.6	74.23
GSMUA_Achr11P...	Banana	cytosol	60.78	50.54
TraesCS5A01G002600.1	Wheat	cytosol, plasma membrane, vacuole	85.95	41.55
TraesCS4A01G274300.1	Wheat	cytosol, golgi, plasma membrane	81.05	39.06
GSMUA_Achr11P...	Banana	cytosol	77.45	37.32
VIT_07s0005g00850.t01	Wine grape	cytosol	72.22	34.75
Bra004449.1-P	Field mustard	plasma membrane	69.28	34.7
CDX80113	Canola	plasma membrane	69.28	34.58
KRG96477	Soybean	cytosol	71.24	34.28
CDY63851	Canola	plasma membrane	69.28	34.03
TraesCS1A01G096600.1	Wheat	cytosol, golgi, plasma membrane	70.92	34.01
AT2G40940.1	Thale cress	cytosol, nucleus, plasma membrane	67.97	33.93
KRH68220	Soybean	cytosol	69.93	33.65
Solyc09g075440.2.1	Tomato	plasma membrane	67.97	32.76
GSMUA_Achr5P21290_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	61.76	32.76
PGSC0003DMT400081399	Potato	cytosol, plasma membrane, vacuole	67.65	32.6
TraesCS2A01G000200.1	Wheat	plasma membrane	48.04	18.89
TraesCS6A01G399400.2	Wheat	mitochondrion, plasma membrane	45.75	17.31
TraesCS6A01G329400.1	Wheat	plasma membrane	40.2	16.85
TraesCS6A01G285800.1	Wheat	plasma membrane	38.56	16.21
TraesCS3A01G433200.1	Wheat	peroxisome	14.38	4.39
TraesCS4A01G264800.1	Wheat	cytosol, peroxisome, plasma membrane	13.4	4.1
TraesCS6A01G312500.2	Wheat	cytosol	12.09	3.75
TraesCS2A01G472800.2	Wheat	nucleus	7.19	3.66
TraesCS7A01G498200.2	Wheat	nucleus	9.8	3.1
TraesCS7A01G146600.1	Wheat	plasma membrane	5.23	1.48
TraesCS4A01G340900.1	Wheat	endoplasmic reticulum, golgi	0.33	0.14

Protein Annotations

EnsemblPlants:TraesCS4A01G344200.1	EnsemblPlantsGene:TraesCS4A01G344200	Gene3D:3.30.450.40	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GAF	InterPro:GAF-like_dom_sf	InterPro:IPR029016	PANTHER:PTHR24423	PANTHER:PTHR24423:SF615	PFAM:PF01590
SEG:seg	SMART:SM00065	SUPFAM:SSF55781	TMHMM:TMhelix	MapMan:11.5.2.1	:

Description

No Description!

Coordinates

chr4A:+:624121271..624122979

Molecular Weight (calculated)

34574.6 Da

IEP (calculated)

8.396

GRAVY (calculated)

0.253

Length

306 amino acids

Sequence
(BLAST)

001: MEGCACIEQF RRTDELLIKY QYISDFFIAL AYFSIPLELI YFAKSASFPY RWVLLQFSAF IVLCGATHLI NLWTFTKHTR TVDIVMTVTK VTTAVVSCAT
101: ALTLIHIIPD LLGVKTRELF LKKADKLDRE LSLMRSQEET GRHVRMLIHE IRSTLDRHTI LKTTLVELGR TLGLQECAFW MPSRSGSSLE LTHTMRHHIP
201: TGSSVEINLP VVNQVFSTNR AIIVPHTSPF ARIHPVQGRH VPPEVAAVRV PLLHLPNFHP ELLAKSYAIM VLMLPSDSAR KWLAHELELI EVVADQVAVA
301: LSCGNS

Best Arabidopsis Sequence Match ( AT1G66340.1 )
(BLAST)

001: MEVCNCIEPQ WPADELLMKY QYISDFFIAI AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRHQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYMLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETILKSSN LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD TRAADFFVVP
501: TGSHFYLRVK VKDSGAGINP QDIPKIFTKF AQTQSLATRS SGGSGLGLAI SKRFVNLMEG NIWIESDGLG KGCTAIFDVK LGISERSNES KQSGIPKVPA
601: IPRHSNFTGL KVLVMDENGV SRMVTKGLLV HLGCEVTTVS SNEECLRVVS HEHKVVFMDV CMPGVENYQI ALRIHEKFTK QRHQRPLLVA LSGNTDKSTK
701: EKCMSFGLDG VLLKPVSLDN IRDVLSDLLE PRVLYEGM

Arabidopsis Description

ETR1Ethylene receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P49333]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.