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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 3
  • cytosol 1
  • endoplasmic reticulum 2
  • extracellular 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:vacuole
 endoplasmic reticulum: 19036844
nucleus: 19036844
plasma membrane: 19036844
gfp PMID: 19036844 doi
Z Lin, L Arciga-Reyes, S Zhong, L Alexander, R Hackett, I Wilson, D Grierson
Plant and Crop Sciences Division, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc07g056580.2.1
Solyc09g009090.2.1
Solyc10g083610.1.1
Solyc10g085570.1.1
Solyc12g011330.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G40940.1 Solyc07g056580.2.1 AT1G66340.1 18577522
AT2G40940.1 Solyc12g011330.2.1 AT1G66340.1 18577522
AT2G40940.1 Solyc09g009090.2.1 AT5G03730.1 9560288
AT2G40940.1 Solyc10g083610.1.1 AT5G03730.1 9560288
AT2G40940.1 Solyc10g085570.1.1 AT5G03730.1 9560288
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400081399 Potato cytosol, plasma membrane, vacuole 98.58 98.58
VIT_07s0005g00850.t01 Wine grape cytosol 74.96 74.84
KRG96477 Soybean cytosol 71.97 71.86
KRH68220 Soybean cytosol 71.65 71.54
Zm00001d033642_P001 Maize plasma membrane 69.76 69.87
Os05t0155200-01 Rice plasma membrane 56.85 69.69
EER91030 Sorghum cytosol 69.61 69.61
GSMUA_Achr11P... Banana cytosol 40.31 69.57
Zm00001d013486_P001 Maize plasma membrane 69.29 69.4
CDX80113 Canola plasma membrane 66.77 69.17
GSMUA_Achr11P... Banana cytosol 69.13 69.13
Os03t0701700-02 Rice cytosol, plasma membrane, vacuole 69.13 69.03
AT2G40940.1 Thale cress cytosol, nucleus, plasma membrane 66.61 69.0
Bra004449.1-P Field mustard plasma membrane 66.14 68.74
TraesCS5B01G001600.1 Wheat plasma membrane 68.19 68.73
TraesCS5A01G002600.1 Wheat cytosol, plasma membrane, vacuole 68.5 68.72
TraesCS5D01G002600.1 Wheat cytosol, plasma membrane, vacuole 68.19 68.4
TraesCS4A01G344200.1 Wheat cytosol, golgi, plasma membrane 32.76 67.97
CDY63851 Canola plasma membrane 66.61 67.9
TraesCS4A01G274300.1 Wheat cytosol, golgi, plasma membrane 67.4 67.4
GSMUA_Achr5P00120_001 Banana cytosol 37.95 67.32
TraesCS4D01G036400.2 Wheat cytosol, golgi, plasma membrane 67.24 67.24
EES19059 Sorghum plasma membrane 66.77 67.09
TraesCS4B01G039300.1 Wheat cytosol, golgi, plasma membrane 67.09 67.09
HORVU6Hr1G045040.2 Barley cytosol 37.17 66.86
Zm00001d037604_P001 Maize plastid 65.51 66.14
TraesCS1B01G127000.1 Wheat cytosol, golgi, plasma membrane 65.67 65.36
GSMUA_Achr5P21290_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 59.37 65.34
HORVU5Hr1G119650.1 Barley endoplasmic reticulum 36.69 65.27
TraesCS1A01G096600.1 Wheat cytosol, golgi, plasma membrane 65.51 65.2
TraesCS1D01G105600.1 Wheat cytosol, golgi, plasma membrane 65.35 64.95
HORVU5Hr1G000590.2 Barley cytosol, mitochondrion, plastid 68.19 64.63
HORVU1Hr1G022550.1 Barley cytosol, golgi, plasma membrane 64.88 64.58
TraesCS5B01G527300.1 Wheat cytosol, golgi, plasma membrane 37.8 64.0
Zm00001d028026_P001 Maize endoplasmic reticulum, extracellular 23.62 60.73
HORVU4Hr1G006260.4 Barley plastid 59.06 58.41
Solyc12g011330.2.1 Tomato endoplasmic reticulum, plasma membrane, plastid 67.56 56.9
Solyc07g056580.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 65.51 56.52
Solyc06g051610.1.1 Tomato cytosol 9.92 37.95
Solyc11g065590.1.1 Tomato cytosol 4.88 34.44
Zm00001d043247_P001 Maize nucleus 17.95 34.23
Solyc06g036450.1.1 Tomato cytosol 5.35 34.0
Solyc09g082910.1.1 Tomato cytosol 8.82 33.73
Solyc04g049990.1.1 Tomato cytosol 6.93 33.59
Solyc12g044870.1.1 Tomato cytosol 8.66 33.13
Solyc12g038690.1.1 Tomato cytosol 3.15 31.25
Solyc09g011680.1.1 Tomato cytosol 5.04 30.77
Solyc06g053710.2.1 Tomato plasma membrane 36.38 30.35
Solyc04g049320.1.1 Tomato cytosol, plastid, vacuole 5.2 30.0
Solyc11g006180.1.1 Tomato plasma membrane 36.06 29.86
Zm00001d013338_P002 Maize cytosol 17.48 29.68
Solyc05g055070.2.1 Tomato plasma membrane 34.17 29.13
Solyc01g014770.1.1 Tomato cytosol 6.14 29.1
Solyc09g089610.2.1 Tomato endoplasmic reticulum 34.49 29.05
Solyc04g064840.1.1 Tomato endoplasmic reticulum 8.03 28.18
Solyc09g065310.1.1 Tomato cytosol 2.83 28.12
Solyc04g025660.1.1 Tomato cytosol 4.57 27.88
Solyc08g068360.1.1 Tomato cytosol 4.88 25.83
Solyc12g027610.1.1 Tomato cytosol 7.87 25.64
Solyc12g062760.1.1 Tomato cytosol 3.46 25.0
Solyc04g008110.2.1 Tomato plasma membrane 21.42 13.7
Solyc05g015610.2.1 Tomato endoplasmic reticulum, golgi, plasma membrane 20.94 12.89
Solyc08g068960.2.1 Tomato cytosol 20.0 12.48
Solyc02g083680.1.1 Tomato plastid 17.01 12.29
Solyc07g047770.2.1 Tomato golgi 20.0 10.28
Solyc12g099720.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 11.34 9.73
Solyc02g083670.2.1 Tomato cytosol 0.0 0.0
Protein Annotations
Gene3D:1.10.287.130MapMan:11.5.2.1Gene3D:3.30.450.40Gene3D:3.30.565.10ProteinID:AAU34075.1InterPro:GAF
InterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0003674GO:GO:0003824GO:GO:0004871
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740
GO:GO:0016772GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0051740InterPro:HATPase_C
InterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:His_kinase_domInterPro:IPR005467InterPro:IPR029016
InterPro:IPR036890PFAM:PF00512PFAM:PF01590PFAM:PF02518PRINTS:PR00344PFscan:PS50109
PANTHER:PTHR24423PANTHER:PTHR24423:SF615UniProt:Q41341SMART:SM00065SMART:SM00387SMART:SM00388
SUPFAM:SSF47384SUPFAM:SSF55781SUPFAM:SSF55874InterPro:Sig_transdc_His_kin-like_CEnsemblPlantsGene:Solyc09g075440.2EnsemblPlants:Solyc09g075440.2.1
TMHMM:TMhelixEMBL:U38666UniParc:UPI00000A8CD7SEG:seg::
Description
Ethylene response sensor 1 [Source:Projected from Arabidopsis thaliana (AT2G40940) UniProtKB/Swiss-Prot;Acc:Q38846]
Coordinates
chr9:-:67134247..67142334
Molecular Weight (calculated)
71010.4 Da
IEP (calculated)
6.946
GRAVY (calculated)
0.151
Length
635 amino acids
Sequence
(BLAST)
001: MESCDCIEAL LPTGDLLVKY QYLSDFFIAV AYFSIPLELI YFVHKSACFP YRWVLMQFGA FIVLCGATHF ISLWTFFMHS KTVAVVMTIS KMLTAAVSCI
101: TALMLVHIIP DLLSVKTREL FLKTRAEELD KEMGLIIRQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLDLAECA LWMPCQGGLT LQLSHNLNNL
201: IPLGSTVPIN LPIINEIFSS PEAIQIPHTN PLARMRNTVG RYIPPEVVAV RVPLLHLSNF TNDWAELSTR SYAVMVLVLP MNGLRKWREH ELELVQVVAD
301: QVAVALSHAA ILEDSMRAHD QLMEQNIALD VARQEAEMAI RARNDFLAVM NHEMRTPMHA VIALCSLLLE TDLTPEQRVM IETILKSSNL LATLINDVLD
401: LSRLEDGILE LENGTFNLHG ILREAVNLIK PIASLKKLSI TLALALDLPI LAVGDAKRLI QTLLNVAGNA VKFTKEGHIS IEASVAKPEY ARDCHPPEMF
501: PMPSDGQFYL RVQVRDTGCG ISPQDIPLVF TKFAESRPTS NRSTGGEGLG LAICRRFIQL MKGNIWIESE GPGKGTTVTF VVKLGICHHP NALPLLPMPP
601: RGRLNKGSDD LFRYRQFRGD DGGMSVNAQR YQRSL
Best Arabidopsis Sequence Match ( AT2G40940.1 )
(BLAST)
001: MESCDCFETH VNQDDLLVKY QYISDALIAL AYFSIPLELI YFVQKSAFFP YKWVLMQFGA FIILCGATHF INLWMFFMHS KAVAIVMTIA KVSCAVVSCA
101: TALMLVHIIP DLLSVKNREL FLKKKADELD REMGLILTQE ETGRHVRMLT HGIRRTLDRH TILRTTLVEL GKTLCLEECA LWMPSQSGLY LQLSHTLSHK
201: IQVGSSVPIN LPIINELFNS AQAMHIPHSC PLAKIGPPVG RYSPPEVVSV RVPLLHLSNF QGSDWSDLSG KGYAIMVLIL PTDGARKWRD HELELVENVA
301: DQVAVALSHA AILEESMHAR DQLMEQNFAL DKARQEAEMA VHARNDFLAV MNHEMRTPMH AIISLSSLLL ETELSPEQRV MIETILKSSN LVATLISDVL
401: DLSRLEDGSL LLENEPFSLQ AIFEEVISLI KPIASVKKLS TNLILSADLP TYAIGDEKRL MQTILNIMGN AVKFTKEGYI SIIASIMKPE SLQELPSPEF
501: FPVLSDSHFY LCVQVKDTGC GIHTQDIPLL FTKFVQPRTG TQRNHSGGGL GLALCKRFVG LMGGYMWIES EGLEKGCTAS FIIRLGICNG PSSSSGSMAL
601: HLAAKSQTRP WNW
Arabidopsis Description
ERS1Ethylene response sensor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q38846]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.