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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 2
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
MultiLoc:plasma membrane
Plant-mPloc:nucleus
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc07g056580.2.1
Solyc12g011330.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G04580.1 Solyc07g056580.2.1 AT1G66340.1 18577522
AT3G04580.1 Solyc12g011330.2.1 AT1G66340.1 18577522
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400060160 Potato endoplasmic reticulum 96.91 94.63
Solyc06g051610.1.1 Tomato cytosol 20.13 90.36
Solyc12g044870.1.1 Tomato cytosol 19.46 87.35
Solyc04g049320.1.1 Tomato cytosol, plastid, vacuole 12.75 86.36
Solyc09g011680.1.1 Tomato cytosol 11.95 85.58
Solyc06g036450.1.1 Tomato cytosol 11.41 85.0
Solyc12g062760.1.1 Tomato cytosol 9.93 84.09
Solyc11g065590.1.1 Tomato cytosol 10.07 83.33
Solyc09g082910.1.1 Tomato cytosol 18.39 82.53
Solyc09g065310.1.1 Tomato cytosol 6.98 81.25
Solyc12g038690.1.1 Tomato cytosol 6.98 81.25
Solyc04g025660.1.1 Tomato cytosol 11.28 80.77
Solyc04g049990.1.1 Tomato cytosol 13.69 77.86
Solyc11g006180.1.1 Tomato plasma membrane 80.13 77.84
Solyc01g014770.1.1 Tomato cytosol 13.56 75.37
Solyc04g064840.1.1 Tomato endoplasmic reticulum 17.05 70.17
Solyc12g027610.1.1 Tomato cytosol 17.85 68.21
Solyc08g068360.1.1 Tomato cytosol 10.87 67.5
VIT_14s0081g00630.t01 Wine grape plasma membrane 67.65 66.32
KRH34165 Soybean plasma membrane 63.36 61.54
KRG92613 Soybean plasma membrane 62.95 61.23
KRH68803 Soybean plasma membrane 62.55 60.68
KRG97057 Soybean plasma membrane 59.33 60.47
CDY30004 Canola plasma membrane 60.13 58.49
Bra040134.1-P Field mustard plasma membrane 60.0 58.36
AT3G04580.1 Thale cress plasma membrane 59.19 57.57
KRG98373 Soybean extracellular 13.29 56.57
Solyc06g053710.2.1 Tomato plasma membrane 56.38 55.19
GSMUA_Achr11P... Banana plasma membrane 55.84 54.88
GSMUA_Achr8P14350_001 Banana endoplasmic reticulum 54.63 53.76
CDY64702 Canola mitochondrion 9.4 53.44
TraesCS2B01G023800.1 Wheat plasma membrane 52.35 50.72
TraesCS2D01G000500.1 Wheat plasma membrane 52.75 50.64
Os04t0169100-02 Rice plasma membrane 51.68 50.46
TraesCS2A01G000200.1 Wheat plasma membrane 52.62 50.39
HORVU2Hr1G000030.1 Barley plasma membrane 51.68 49.68
HORVU0Hr1G001750.2 Barley endoplasmic reticulum 51.68 49.55
EES10426 Sorghum plasma membrane 51.41 49.55
CDY21123 Canola cytosol 19.87 49.33
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, plasma membrane 42.55 48.62
Zm00001d004372_P003 Maize plasma membrane 49.66 48.05
Solyc09g089610.2.1 Tomato endoplasmic reticulum 48.19 47.61
OQU85974 Sorghum plasma membrane 49.4 47.42
TraesCS6B01G439600.1 Wheat mitochondrion 49.66 47.19
TraesCS6D01G383600.1 Wheat mitochondrion 49.66 47.19
Zm00001d051889_P002 Maize endoplasmic reticulum 47.25 46.68
Zm00001d025050_P001 Maize cytosol, golgi, plasma membrane 50.2 46.52
TraesCS6A01G399400.2 Wheat mitochondrion, plasma membrane 49.66 45.74
HORVU6Hr1G091700.6 Barley cytosol, mitochondrion, plasma membrane 49.8 45.13
HORVU6Hr1G080170.1 Barley plasma membrane 11.28 44.68
Os02t0820900-03 Rice mitochondrion 48.32 43.06
TraesCS6B01G360200.1 Wheat cytosol, endoplasmic reticulum, golgi 38.79 39.7
TraesCS6D01G266200.1 Wheat plasma membrane 38.52 39.53
TraesCS6B01G314600.1 Wheat plasma membrane 38.52 39.37
TraesCS6A01G285800.1 Wheat plasma membrane 38.39 39.29
TraesCS6D01G308300.1 Wheat plasma membrane 38.26 39.15
TraesCS6A01G329400.1 Wheat plasma membrane 38.26 39.04
HORVU6Hr1G071860.2 Barley plasma membrane 37.72 38.92
HORVU6Hr1G080180.1 Barley cytosol 25.37 37.57
Os07t0259100-01 Rice mitochondrion, plasma membrane 38.52 36.94
Solyc07g056580.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 35.7 36.14
Solyc12g011330.2.1 Tomato endoplasmic reticulum, plasma membrane, plastid 36.11 35.68
Zm00001d053594_P001 Maize plasma membrane 37.72 34.99
EES06508 Sorghum mitochondrion, plasma membrane 37.99 34.22
Solyc09g075440.2.1 Tomato plasma membrane 29.13 34.17
KXG36402 Sorghum plasma membrane 36.78 32.05
Zm00001d021687_P001 Maize plasma membrane 35.7 31.11
Solyc02g083670.2.1 Tomato cytosol 3.09 30.67
Solyc04g008110.2.1 Tomato plasma membrane 17.72 13.29
Solyc05g015610.2.1 Tomato endoplasmic reticulum, golgi, plasma membrane 17.85 12.89
Solyc08g068960.2.1 Tomato cytosol 16.38 11.98
Solyc07g047770.2.1 Tomato golgi 17.85 10.77
Solyc12g099720.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 8.46 8.51
Solyc02g083680.1.1 Tomato plastid 9.93 8.42
Protein Annotations
Gene3D:1.10.287.130MapMan:11.5.2.1Gene3D:3.30.450.40Gene3D:3.30.565.10Gene3D:3.40.50.2300InterPro:CheY-like_superfamily
ncoils:CoilInterPro:ETRInterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004673GO:GO:0004871GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009719GO:GO:0009873GO:GO:0009987GO:GO:0010105GO:GO:0016020
GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0018106GO:GO:0019538
GO:GO:0023014GO:GO:0038023GO:GO:0038199GO:GO:0046872GO:GO:0050896GO:GO:0051740
InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:His_kinase_domInterPro:IPR001789
InterPro:IPR005467InterPro:IPR029016InterPro:IPR036890UniProt:K4C2I4PFAM:PF00072PFAM:PF01590
PFAM:PF02518PIRSF:PIRSF026389PFscan:PS50109PFscan:PS50110PANTHER:PTHR43719PANTHER:PTHR43719:SF6
SMART:SM00065SMART:SM00448SUPFAM:SSF47384SUPFAM:SSF52172SUPFAM:SSF55781SUPFAM:SSF55874
InterPro:Sig_transdc_resp-reg_receiverEnsemblPlantsGene:Solyc05g055070.2EnsemblPlants:Solyc05g055070.2.1TMHMM:TMhelixUniParc:UPI0002766EA5:
Description
No Description!
Coordinates
chr5:-:64859523..64863546
Molecular Weight (calculated)
83117.6 Da
IEP (calculated)
7.057
GRAVY (calculated)
0.031
Length
745 amino acids
Sequence
(BLAST)
001: MATDSEFSNC NCDEEGVFWN IHTILDCQKV SDFLIAIAYF SIPLELLYFI SCSDVPFKWV LVQFIAFIVL CGLTHLLNGL TYSAHPSFQL IMSLTVAKIL
101: TALVSCATAI TLLTLFPMLL KVKVRELFLT QNVLELDQEV GMMKKQKEVY THVRMLTREI RKSLDKHTIL YTTLVELSKT LNLQNCAVWM PNEDRSLMNL
201: THGLSPGSAV EYHRSLPIDD PDVLEITKNK GVRILRQDSV LAAASSGGPG EPCTVAAIRM PLLCASDFKG GTPELVDTRY AILVLVIPGA NDDCSHNEME
301: IVEVVADQVA VALSHATVLE ESQLMREKLE ARNGLLQQAK ENAVKASQAR NSFQKVMNNG MRRPMHSVLG LLSILQDENT SSNQKIIIDT MVRTSTVLSN
401: LINDAMDIPD KDEGRFPVEM MPFQLHSLIR EASCLVKCLC VYKGFRFSTD VPNSLPNLVM GDEKRTFQVI LHMVGHLLNI SSGRGSVVFK VILESGIEGG
501: NDKLQGARKH SVFDEYVTIK FEIEVSRGGS QTDSSISTSH FGGKRYNSKE LKEGMSFSMC KKLVQMMQGN VWMPSNTDGH AQKMTLILRF LKQSSFRKHM
601: FELVHPLEQA ISSSTFKGLQ VLLADDDDVN RMVTKKLLQK LGCQVIAVSS GFQCLSAMGH STTSIQVVIL DLHMPEMDGF EVTTRVRKFH SRSWPLIIAL
701: SSTSEQQVWD RCLQVGINGL IRKPVLLQGM AEELQRVLQR AGEGF
Best Arabidopsis Sequence Match ( AT3G04580.2 )
(BLAST)
001: MLRSLGLGLL LFALLALVSG DNDYVSCNCD DEGFLSVHTI LECQRVSDLL IAIAYFSIPL ELLYFISFSN VPFKWVLVQF IAFIVLCGMT HLLNAWTYYG
101: PHSFQLMLWL TIFKFLTALV SCATAITLLT LIPLLLKWKV RELYLKQNVL ELNEEVGLMK RQKEMSVQVR MLTREIRKSL DKHMILRTTL VELSKILDLQ
201: NSAVWMPNEN RTEMHLTHEL RANPMRSFRV IPINDPDVVQ VRETKVVTIL RKNSVLAVES SGCGGSEEFG PVAAIRMPML HGLNFKGGTP EFVDTPYAIM
301: VLVLPSANSR VWTDKEIEIA EVVADQVAVA ISHASVLEES QLMREKLGIQ NRALLRAKQN AMMASQARNT CQKVMSHGMR RPMHTILGLL SMFQSESMSL
401: DQKIIVDALM KTSTVLSALI NDVIDISPKD NGKSALEVKR FQLHSLIREA ACVAKCLSVY KGYGFEMDVQ TRLPNLVVGD EKRTFQLVMY MLGYILDMTD
501: GGKTVTFRVI CEGTGTSQDK SKRETGMWKS HMSDDSLGVK FEVEINEIQN PPLDGSAMAM RHIPNRRYHS NGIKEGLSLG MCRKLAQMMQ GNIWISPKSH
601: GQTQSMQLVL RFQTRPSIRR SILAGNAPEL QHPNSNSILR GLRITLADDD DVNRTVTKRL LEKLGCEVTA VSSGFECLNA LSNVEMSYRV VILDLQMPEM
701: DGFEVAMKIR KFCGHHWPLI IALTASTEDH VRERCLQMGM NGMIQKPVLL HVMASELRRA LQTASE
Arabidopsis Description
EIN4EIN4 [Source:UniProtKB/TrEMBL;Acc:A0A178VKQ4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.