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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • endoplasmic reticulum 3
  • extracellular 2
  • vacuole 2
  • plasma membrane 4
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES06508
EES10426
KXG30326
KXG36402
OQU85974
OQU89015

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04310.1 EES06508 AT1G04310.1 18577522
AT1G04310.1 EES10426 AT1G04310.1 18577522
AT1G04310.1 KXG36402 AT1G04310.1 18577522
AT1G04310.1 OQU85974 AT1G04310.1 18577522
AT3G23150.1 KXG30326 AT5G03730.1 12177468
AT3G23150.1 OQU89015 AT5G03730.1 12177468
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d051889_P002 Maize endoplasmic reticulum 87.89 90.45
TraesCS6D01G383600.1 Wheat mitochondrion 79.64 78.83
TraesCS6B01G439600.1 Wheat mitochondrion 79.51 78.7
TraesCS6A01G399400.2 Wheat mitochondrion, plasma membrane 79.64 76.39
HORVU6Hr1G091700.6 Barley cytosol, mitochondrion, plasma membrane 79.38 74.94
Os02t0820900-03 Rice mitochondrion 78.35 72.73
GSMUA_Achr11P... Banana plasma membrane 56.57 57.92
GSMUA_Achr8P14350_001 Banana endoplasmic reticulum 54.9 56.27
VIT_14s0081g00630.t01 Wine grape plasma membrane 51.29 52.37
EES10426 Sorghum plasma membrane 52.06 52.26
Solyc06g051610.1.1 Tomato cytosol 11.08 51.81
VIT_05s0049g00090.t01 Wine grape plasma membrane 50.9 51.7
Solyc11g006180.1.1 Tomato plasma membrane 49.61 50.2
PGSC0003DMT400073847 Potato plasma membrane 49.61 50.2
Solyc06g053710.2.1 Tomato plasma membrane 49.1 50.07
PGSC0003DMT400041983 Potato plasma membrane 48.58 49.54
Solyc05g055070.2.1 Tomato plasma membrane 47.42 49.4
PGSC0003DMT400060160 Potato endoplasmic reticulum 48.2 49.02
Solyc06g036450.1.1 Tomato cytosol 6.31 49.0
CDY70443 Canola plasma membrane 48.32 48.08
CDY35503 Canola plasma membrane 48.2 48.01
Bra023756.1-P Field mustard plasma membrane 48.07 47.82
Solyc11g065590.1.1 Tomato cytosol 5.54 47.78
Solyc12g044870.1.1 Tomato cytosol 10.18 47.59
Bra040134.1-P Field mustard plasma membrane 46.39 47.0
AT3G04580.1 Thale cress plasma membrane 46.26 46.87
CDY30004 Canola plasma membrane 46.26 46.87
Solyc09g082910.1.1 Tomato cytosol 9.92 46.39
AT3G23150.1 Thale cress endoplasmic reticulum, plasma membrane 46.13 46.31
CDY67999 Canola plasma membrane 36.47 45.72
Bra015303.1-P Field mustard endoplasmic reticulum 36.21 45.62
Solyc04g049320.1.1 Tomato cytosol, plastid, vacuole 6.44 45.45
CDY70681 Canola endoplasmic reticulum 36.08 45.38
CDX86641 Canola endoplasmic reticulum 34.54 45.04
Solyc04g049990.1.1 Tomato cytosol 7.6 45.04
AT1G04310.1 Thale cress endoplasmic reticulum 36.21 43.57
PGSC0003DMT400044244 Potato plasma membrane 41.88 43.16
Solyc09g089610.2.1 Tomato endoplasmic reticulum 41.37 42.57
Solyc12g038690.1.1 Tomato cytosol 3.48 42.19
Solyc09g065310.1.1 Tomato cytosol 3.48 42.19
Solyc01g014770.1.1 Tomato cytosol 7.09 41.04
Solyc04g025660.1.1 Tomato cytosol 5.41 40.38
Solyc09g011680.1.1 Tomato cytosol 5.41 40.38
Solyc12g062760.1.1 Tomato cytosol 4.38 38.64
Solyc04g064840.1.1 Tomato endoplasmic reticulum 8.76 37.57
CDY64702 Canola mitochondrion 6.31 37.4
EER91030 Sorghum cytosol 30.15 36.85
EES06508 Sorghum mitochondrion, plasma membrane 38.92 36.52
EES19059 Sorghum plasma membrane 29.25 35.92
Solyc08g068360.1.1 Tomato cytosol 5.54 35.83
KRH31729 Soybean endoplasmic reticulum 10.95 35.56
KXG36402 Sorghum plasma membrane 38.27 34.74
Solyc12g027610.1.1 Tomato cytosol 8.51 33.85
CDY21123 Canola cytosol 12.89 33.33
Bra030564.1-P Field mustard plasma membrane 39.82 18.36
CDY15498 Canola plasma membrane 39.69 18.01
EER93561 Sorghum cytosol 17.14 13.35
EES07292 Sorghum mitochondrion 16.24 12.95
KXG34012 Sorghum cytosol, peroxisome, plasma membrane 16.62 12.84
OQU76804 Sorghum nucleus 14.69 11.89
EER94128 Sorghum extracellular, plasma membrane 9.54 9.96
KXG19481 Sorghum plasma membrane 13.02 9.26
KXG26059 Sorghum endoplasmic reticulum, extracellular, golgi 6.31 8.66
Protein Annotations
Gene3D:1.10.287.130MapMan:11.5.2.1Gene3D:3.30.450.40Gene3D:3.30.565.10Gene3D:3.40.50.2300UniProt:A0A109ND84
InterPro:CheY-like_superfamilyncoils:CoilInterPro:ETRInterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155
GO:GO:0000160GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004673GO:GO:0004871
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0006464GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009873GO:GO:0009987GO:GO:0010105
GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0018106
GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0038199GO:GO:0046872GO:GO:0050896
GO:GO:0051740InterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:IPR001789InterPro:IPR029016
InterPro:IPR036890ProteinID:KXG18759.1EnsemblPlants:OQU85974ProteinID:OQU85974ProteinID:OQU85974.1ProteinID:OQU85975.1
PFAM:PF00072PFAM:PF00512PFAM:PF01590PIRSF:PIRSF026389PFscan:PS50110PANTHER:PTHR43719
PANTHER:PTHR43719:SF21SMART:SM00065SMART:SM00388SMART:SM00448EnsemblPlantsGene:SORBI_3004G349175SUPFAM:SSF47384
SUPFAM:SSF52172SUPFAM:SSF55781SUPFAM:SSF55874InterPro:Sig_transdc_resp-reg_receiverSignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI00076BBF8ASEG:seg::::
Description
hypothetical protein
Coordinates
chr4:+:67810865..67814675
Molecular Weight (calculated)
85924.6 Da
IEP (calculated)
6.888
GRAVY (calculated)
0.073
Length
776 amino acids
Sequence
(BLAST)
001: MLCPRSGCSS RHSSPIAMRM RWLLLWALAA FAPAPAPALA AGEMGYTHCG CDGGGGAGGF WSLDNIFKWQ KVSDLLIAAA YFSIPLEILY FVAGLRHLLP
101: FRWVLVQFGA FIVLCGLTHL LAAFTYEPHP FMVVLLLTAA KFLTALVSFL TAITLLTLIP QLLRVKVRES LLWIKARELD REVVLMKRQE EASWHVRMLT
201: QEIRRSLDRH TVLYTTLIEL SRVLALNNCA VWMPSEDKSG MCLTHELRRD SDDDGEAVVA ADDADVLEVK ATDGVKLLPP DSVLGSASGG GKEGTGTVAA
301: IRMPMLKVAD FKGGTPEVIK TSYAVLVLVP PSDRNWAPHE LEIVEVVADQ VAVALSHASL LEESQAMRDR LAEQNRELLQ ARRDALMANE ARDAFQRVMS
401: QGMRRPIHSI QGLVSVVQEE GLTSEQKLVV DTMARTATVV STLINDVMEM SAANQERFPL ETRPFHLHSM IRDAACVARC LCDFRGFGFA VHVENVLPDL
501: VIGDERRIFH VLLHMVGNLI GRIDVGNVTF RVRADDEAME DQRWNPWRPS YSGGHSSVKF VIGVKRQQNA DSPSSLAQFL RRPRTEGFDL RLSFSMCRKL
601: VQMMQGNIWA ILDGQGLPES MTLVLRFQLQ PSLASSSLGG SFDLQYPSPT NQIAGLKVLL IDDDEINLVV ARKLLERLGC TVSSLPSGSG FMNSVGPSST
701: SSQLVMVNLE MSTINPLDAA SRIRQYRSSH WPLVMAMTSE QNVWEKCAQS GINGVLKKPL VLQEVKEELT RILQNT
Best Arabidopsis Sequence Match ( AT3G04580.2 )
(BLAST)
001: MLRSLGLGLL LFALLALVSG DNDYVSCNCD DEGFLSVHTI LECQRVSDLL IAIAYFSIPL ELLYFISFSN VPFKWVLVQF IAFIVLCGMT HLLNAWTYYG
101: PHSFQLMLWL TIFKFLTALV SCATAITLLT LIPLLLKWKV RELYLKQNVL ELNEEVGLMK RQKEMSVQVR MLTREIRKSL DKHMILRTTL VELSKILDLQ
201: NSAVWMPNEN RTEMHLTHEL RANPMRSFRV IPINDPDVVQ VRETKVVTIL RKNSVLAVES SGCGGSEEFG PVAAIRMPML HGLNFKGGTP EFVDTPYAIM
301: VLVLPSANSR VWTDKEIEIA EVVADQVAVA ISHASVLEES QLMREKLGIQ NRALLRAKQN AMMASQARNT CQKVMSHGMR RPMHTILGLL SMFQSESMSL
401: DQKIIVDALM KTSTVLSALI NDVIDISPKD NGKSALEVKR FQLHSLIREA ACVAKCLSVY KGYGFEMDVQ TRLPNLVVGD EKRTFQLVMY MLGYILDMTD
501: GGKTVTFRVI CEGTGTSQDK SKRETGMWKS HMSDDSLGVK FEVEINEIQN PPLDGSAMAM RHIPNRRYHS NGIKEGLSLG MCRKLAQMMQ GNIWISPKSH
601: GQTQSMQLVL RFQTRPSIRR SILAGNAPEL QHPNSNSILR GLRITLADDD DVNRTVTKRL LEKLGCEVTA VSSGFECLNA LSNVEMSYRV VILDLQMPEM
701: DGFEVAMKIR KFCGHHWPLI IALTASTEDH VRERCLQMGM NGMIQKPVLL HVMASELRRA LQTASE
Arabidopsis Description
EIN4EIN4 [Source:UniProtKB/TrEMBL;Acc:A0A178VKQ4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.