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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 7
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70289
CDX80884
CDY07498
CDY10360
CDY11267
CDY49629
CDY49633
CDY66567

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G23150.1 CDY07498 AT1G66340.1 18577522
AT3G23150.1 CDY49629 AT1G66340.1 18577522
AT3G23150.1 CDY49633 AT1G66340.1 18577522
AT3G23150.1 CDY66567 AT1G66340.1 18577522
AT3G23150.1 CDX70289 AT5G03730.1 12177468
AT3G23150.1 CDX80884 AT5G03730.1 12177468
AT3G23150.1 CDY10360 AT5G03730.1 12177468
AT3G23150.1 CDY11267 AT5G03730.1 12177468
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35503 Canola plasma membrane 97.69 97.82
AT3G23150.1 Thale cress endoplasmic reticulum, plasma membrane 86.03 86.8
KRG90373 Soybean plasma membrane 40.26 68.71
KRH34517 Soybean plasma membrane 61.41 64.99
VIT_05s0049g00090.t01 Wine grape plasma membrane 63.08 64.4
KRG92290 Soybean plasma membrane 62.31 63.78
Solyc06g053710.2.1 Tomato plasma membrane 58.46 59.92
PGSC0003DMT400041983 Potato plasma membrane 58.21 59.66
CDY30004 Canola plasma membrane 53.85 54.83
CDX86641 Canola endoplasmic reticulum 41.79 54.79
GSMUA_Achr11P... Banana plasma membrane 52.05 53.56
CDY67999 Canola plasma membrane 41.54 52.34
CDY70681 Canola endoplasmic reticulum 41.28 52.19
GSMUA_Achr8P14350_001 Banana endoplasmic reticulum 50.38 51.92
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, plasma membrane 41.92 50.15
TraesCS2B01G023800.1 Wheat plasma membrane 49.23 49.94
TraesCS2D01G000500.1 Wheat plasma membrane 49.49 49.74
KRG90374 Soybean cytosol 14.23 49.55
TraesCS2A01G000200.1 Wheat plasma membrane 49.36 49.49
HORVU0Hr1G001750.2 Barley endoplasmic reticulum 49.1 49.29
Os04t0169100-02 Rice plasma membrane 47.95 49.02
Zm00001d051889_P002 Maize endoplasmic reticulum 47.31 48.94
PGSC0003DMT400044244 Potato plasma membrane 47.18 48.87
HORVU2Hr1G000030.1 Barley plasma membrane 48.46 48.77
Solyc09g089610.2.1 Tomato endoplasmic reticulum 47.05 48.67
TraesCS6B01G439600.1 Wheat mitochondrion 48.72 48.47
TraesCS6D01G383600.1 Wheat mitochondrion 48.59 48.34
OQU85974 Sorghum plasma membrane 48.08 48.32
EES10426 Sorghum plasma membrane 47.56 47.99
Zm00001d004372_P003 Maize plasma membrane 46.79 47.4
CDY64702 Canola mitochondrion 7.95 47.33
TraesCS6A01G399400.2 Wheat mitochondrion, plasma membrane 48.59 46.85
HORVU6Hr1G091700.6 Barley cytosol, mitochondrion, plasma membrane 48.72 46.23
Zm00001d025050_P001 Maize cytosol, golgi, plasma membrane 47.44 46.02
HORVU6Hr1G080170.1 Barley plasma membrane 10.9 45.21
Os02t0820900-03 Rice mitochondrion 47.31 44.14
CDY21123 Canola cytosol 16.03 41.67
CDY49633 Canola cytosol 37.44 39.73
CDY07498 Canola cytosol 37.44 39.67
TraesCS6D01G266200.1 Wheat plasma membrane 36.79 39.53
TraesCS6B01G360200.1 Wheat cytosol, endoplasmic reticulum, golgi 36.79 39.42
TraesCS6A01G285800.1 Wheat plasma membrane 36.67 39.29
TraesCS6A01G329400.1 Wheat plasma membrane 36.67 39.18
HORVU6Hr1G071860.2 Barley plasma membrane 36.03 38.92
TraesCS6D01G308300.1 Wheat plasma membrane 36.28 38.87
TraesCS6B01G314600.1 Wheat plasma membrane 35.64 38.13
Os07t0259100-01 Rice mitochondrion, plasma membrane 37.82 37.97
CDX80113 Canola plasma membrane 29.49 37.52
HORVU6Hr1G080180.1 Barley cytosol 24.1 37.38
CDY63851 Canola plasma membrane 29.49 36.92
Zm00001d053594_P001 Maize plasma membrane 35.38 34.37
EES06508 Sorghum mitochondrion, plasma membrane 36.28 34.22
CDY49629 Canola cytosol 5.9 33.09
KXG36402 Sorghum plasma membrane 36.03 32.87
Zm00001d021687_P001 Maize plasma membrane 34.74 31.7
CDY66567 Canola cytosol 5.9 31.51
CDY15498 Canola plasma membrane 47.31 21.58
CDY03102 Canola cytosol 1.67 18.06
CDY03106 Canola cytosol 1.67 18.06
CDY50037 Canola endoplasmic reticulum, golgi, plasma membrane 19.62 13.92
CDX93074 Canola plasma membrane 19.36 13.76
CDY03101 Canola cytosol, peroxisome, plasma membrane 18.46 13.69
CDY17631 Canola cytosol, peroxisome, plasma membrane 18.46 13.69
CDY03909 Canola endoplasmic reticulum, golgi, plasma membrane 17.31 13.49
CDY15717 Canola endoplasmic reticulum, golgi, plasma membrane 17.56 13.42
CDX97049 Canola nucleus 15.26 13.28
CDX69808 Canola nucleus 15.26 13.25
CDY67688 Canola nucleus 15.38 13.17
CDY40112 Canola nucleus 15.38 13.1
CDX90318 Canola cytosol 5.13 12.99
CDY47297 Canola plasma membrane 19.1 12.97
CDX74635 Canola cytosol, golgi, plasma membrane 18.85 12.79
CDX78398 Canola cytosol 10.0 12.42
CDX78397 Canola cytosol 5.38 10.91
CDY24380 Canola nucleus 16.03 10.47
CDY20843 Canola nucleus 15.77 10.31
CDX70367 Canola endoplasmic reticulum, golgi 15.51 8.82
CDY12735 Canola endoplasmic reticulum, golgi, plasma membrane 11.28 8.26
CDY01193 Canola endoplasmic reticulum, golgi, plasma membrane 11.28 8.24
CDX80103 Canola endoplasmic reticulum, golgi, plasma membrane 10.51 7.37
CDY55381 Canola endoplasmic reticulum, plasma membrane, plastid 10.64 7.27
Protein Annotations
Gene3D:1.10.287.130MapMan:11.5.2.1Gene3D:3.30.450.40Gene3D:3.30.565.10Gene3D:3.40.50.2300GO:A0A078JS69
UniProt:A0A078JS69EnsemblPlants:CDY70443ProteinID:CDY70443ProteinID:CDY70443.1InterPro:CheY-like_superfamilyncoils:Coil
InterPro:ETRInterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004673GO:GO:0004871GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0005789GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009719GO:GO:0009873GO:GO:0009987GO:GO:0010105GO:GO:0016020GO:GO:0016021
GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0018106GO:GO:0019538GO:GO:0023014
GO:GO:0038023GO:GO:0038199GO:GO:0046872GO:GO:0050896GO:GO:0051740EnsemblPlantsGene:GSBRNA2T00003436001
InterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:IPR001789InterPro:IPR029016InterPro:IPR036890
PFAM:PF00072PFAM:PF01590PIRSF:PIRSF026389PFscan:PS50110PANTHER:PTHR43719PANTHER:PTHR43719:SF6
SMART:SM00065SMART:SM00388SMART:SM00448SUPFAM:SSF47384SUPFAM:SSF52172SUPFAM:SSF55781
InterPro:Sig_transdc_resp-reg_receiverSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0004EECAC1SEG:seg:
Description
BnaCnng68360DBnaCnng68360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JS69]
Coordinates
chrLK042139:+:286..2705
Molecular Weight (calculated)
86448.5 Da
IEP (calculated)
6.984
GRAVY (calculated)
0.083
Length
780 amino acids
Sequence
(BLAST)
001: MMVREVASGL LILFSILIWV SPAAAGNGGG CNCEDEGVSF WSTENILETQ RVSDFLIAVA YFSIPIELLY FVSCSNVPFK WVLFEFIAFI VLCGMTHLLH
101: GWTYGPHPFK LMVALTVFKM LTALVSCATA ITLITLIPLL LKVKVREFML KKKAHELGRE VGLIMIQKET GVHVRMLTQE IRKSLDRHTI LYTTLVELSK
201: TLALQNCAVW MENEGKSEMN LTHELRGSSG RSGYGYSVSM HDVDVVRVRE SNDVHILSVD SLIARASGGD VSEIGPVAAI RMPMLRVSDF KGGTPELIQT
301: CYAILVCVLP SGQPRDWSYQ EIEIVKVVAD QVAVALSHAA VLEESQMMRD KLTDQNRALQ IAKRDAMRAS QARNVLQKAM SEGMRRPMHS ILGLLSMIQD
401: EKLSNEQKMI VDTMVKTGNV MSNLVGDAMD VSDGRFVTEM KPFSLHRTVR EAACLARCLC LYNGFRFTVD AEMSLPDNVV GDERRVFQVI LHMVGSLVKP
501: RKCREGSLSS SVIFKVFKER GSLDRSDQRW AAWRSPTCSA DGDVYIRFEM SVENDGSGSQ SFASVSSRDQ EVGEVRLSGY GLGQDLSFDV CKKVVQLIQG
601: NISVVPGSDG SPETMSLLLR FRRRPSISVH GTGEAPAPDH HLHPHSDSLL RGLQVLLVDT NDSNRAVTRK LLEKLGCIVT AVSSGFDCLT AIAPSSSSSS
701: STFQVVVLDL QMAEMDGYEV AMRIRSRSWP LIVAMTVSLD EEMWDKCMQI GINGVVKKPV MLRAMESELR RVLLQADQLL
Best Arabidopsis Sequence Match ( AT3G23150.1 )
(BLAST)
001: MVKEIASWLL ILSMVVFVSP VLAINGGGYP RCNCEDEGNS FWSTENILET QRVSDFLIAV AYFSIPIELL YFVSCSNVPF KWVLFEFIAF IVLCGMTHLL
101: HGWTYSAHPF RLMMAFTVFK MLTALVSCAT AITLITLIPL LLKVKVREFM LKKKAHELGR EVGLILIKKE TGFHVRMLTQ EIRKSLDRHT ILYTTLVELS
201: KTLGLQNCAV WMPNDGGTEM DLTHELRGRG GYGGCSVSME DLDVVRIRES DEVNVLSVDS SIARASGGGG DVSEIGAVAA IRMPMLRVSD FNGELSYAIL
301: VCVLPGGTPR DWTYQEIEIV KVVADQVTVA LDHAAVLEES QLMREKLAEQ NRALQMAKRD ALRASQARNA FQKTMSEGMR RPMHSILGLL SMIQDEKLSD
401: EQKMIVDTMV KTGNVMSNLV GDSMDVPDGR FGTEMKPFSL HRTIHEAACM ARCLCLCNGI RFLVDAEKSL PDNVVGDERR VFQVILHIVG SLVKPRKRQE
501: GSSLMFKVLK ERGSLDRSDH RWAAWRSPAS SADGDVYIRF EMNVENDDSS SQSFASVSSR DQEVGDVRFS GGYGLGQDLS FGVCKKVVQL IHGNISVVPG
601: SDGSPETMSL LLRFRRRPSI SVHGSSESPA PDHHAHPHSN SLLRGLQVLL VDTNDSNRAV TRKLLEKLGC DVTAVSSGFD CLTAIAPGSS SPSTSFQVVV
701: LDLQMAEMDG YEVAMRIRSR SWPLIVATTV SLDEEMWDKC AQIGINGVVR KPVVLRAMES ELRRVLLQAD QLL
Arabidopsis Description
ETR2Ethylene receptor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPQ2]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.