CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, endoplasmic reticulum

Predictor Summary:

extracellular 5
golgi 6
plasma membrane 6
endoplasmic reticulum 6
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70289
CDX80884
CDX85268	plasma membrane
CDX86370	plasma membrane
CDY00096	plasma membrane
CDY10360
CDY11267
CDY19286	plasma membrane
CDY19992	plasma membrane
CDY37282	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47430.1	CDY19286	AT3G21510.1	21569135
AT2G47430.1	CDY37282	AT3G21510.1	21569135
AT2G47430.1	CDX85268	AT3G29350.1	10930573
AT2G47430.1	CDX86370	AT3G29350.1	10930573
AT2G47430.1	CDY00096	AT3G29350.1	10930573
AT2G47430.1	CDY19992	AT3G29350.1	10930573
AT2G47430.1	CDX85268	AT3G29350.1	21569135
AT2G47430.1	CDX86370	AT3G29350.1	21569135
AT2G47430.1	CDY00096	AT3G29350.1	21569135
AT2G47430.1	CDY19992	AT3G29350.1	21569135
AT2G47430.1	CDX70289	AT5G03730.1	9560288
AT2G47430.1	CDX80884	AT5G03730.1	9560288
AT2G47430.1	CDY10360	AT5G03730.1	9560288
AT2G47430.1	CDY11267	AT5G03730.1	9560288

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01193	Canola	endoplasmic reticulum, golgi, plasma membrane	93.8	93.54
AT2G47430.1	Thale cress	plasma membrane	67.98	64.53
CDX80103	Canola	endoplasmic reticulum, golgi, plasma membrane	64.51	61.73
CDY55381	Canola	endoplasmic reticulum, plasma membrane, plastid	64.88	60.51
VIT_07s0005g01380.t01	Wine grape	plasma membrane	40.47	39.4
Solyc12g099720.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	26.76	38.51
PGSC0003DMT400011818	Potato	extracellular, golgi, peroxisome	26.95	37.47
KRH68254	Soybean	cytosol	36.71	37.03
Zm00001d012994_P001	Maize	extracellular, golgi, vacuole	23.29	33.74
EER94128	Sorghum	extracellular, plasma membrane	23.38	33.51
TraesCS4A01G340900.1	Wheat	endoplasmic reticulum, golgi	22.25	32.29
KXG26059	Sorghum	endoplasmic reticulum, extracellular, golgi	16.9	31.8
TraesCS5B01G533800.1	Wheat	endoplasmic reticulum, golgi	21.88	31.74
GSMUA_Achr3P22920_001	Banana	extracellular	26.76	29.69
TraesCS7D01G148400.1	Wheat	endoplasmic reticulum, plasma membrane	23.19	26.94
Zm00001d035846_P001	Maize	extracellular	25.92	26.64
TraesCS7A01G146600.1	Wheat	plasma membrane	26.85	26.46
Os06t0183200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	25.92	26.34
TraesCS7D01G148100.1	Wheat	plasma membrane	26.57	26.16
KXG19481	Sorghum	plasma membrane	26.48	25.85
TraesCS7D01G148700.1	Wheat	peroxisome, plasma membrane, plastid	23.19	25.65
TraesCS7B01G049100.1	Wheat	plasma membrane	26.48	25.57
TraesCS7B01G049400.1	Wheat	plasma membrane	24.6	25.07
HORVU7Hr1G030040.2	Barley	extracellular	22.07	22.71
CDY03102	Canola	cytosol	1.41	20.83
CDY20843	Canola	nucleus	22.35	19.95
CDY24380	Canola	nucleus	22.25	19.85
CDY64702	Canola	mitochondrion	2.44	19.85
CDY03106	Canola	cytosol	1.31	19.44
CDY21123	Canola	cytosol	5.16	18.33
CDY15717	Canola	endoplasmic reticulum, golgi, plasma membrane	17.28	18.02
CDY49629	Canola	cytosol	2.35	17.99
CDY17631	Canola	cytosol, peroxisome, plasma membrane	17.56	17.78
CDY03101	Canola	cytosol, peroxisome, plasma membrane	17.56	17.78
CDY03909	Canola	endoplasmic reticulum, golgi, plasma membrane	16.53	17.58
CDY49633	Canola	cytosol	12.11	17.55
CDY07498	Canola	cytosol	12.02	17.39
CDY66567	Canola	cytosol	2.35	17.12
CDX93074	Canola	plasma membrane	16.9	16.41
CDY50037	Canola	endoplasmic reticulum, golgi, plasma membrane	16.81	16.29
CDY67688	Canola	nucleus	13.71	16.03
CDY40112	Canola	nucleus	13.71	15.94
CDX80113	Canola	plasma membrane	9.11	15.82
CDX69808	Canola	nucleus	13.05	15.48
CDX97049	Canola	nucleus	12.96	15.4
CDY47297	Canola	plasma membrane	16.53	15.32
CDX74635	Canola	cytosol, golgi, plasma membrane	16.34	15.14
CDY63851	Canola	plasma membrane	8.83	15.09
CDX78398	Canola	cytosol	8.54	14.49
CDX90318	Canola	cytosol	3.76	12.99
CDY30004	Canola	plasma membrane	9.11	12.66
CDY35503	Canola	plasma membrane	8.36	11.42
CDY70443	Canola	plasma membrane	8.26	11.28
CDX70367	Canola	endoplasmic reticulum, golgi	13.52	10.5
CDX86641	Canola	endoplasmic reticulum	5.45	9.75
CDY67999	Canola	plasma membrane	5.45	9.37
CDY70681	Canola	endoplasmic reticulum	5.26	9.08
CDX78397	Canola	cytosol	2.82	7.79
CDY15498	Canola	plasma membrane	7.23	4.5

Protein Annotations

Gene3D:1.10.287.130	MapMan:11.4.2.3	Gene3D:3.30.565.10	Gene3D:3.40.50.2300	GO:A0A078FED9	UniProt:A0A078FED9
EnsemblPlants:CDY12735	ProteinID:CDY12735	ProteinID:CDY12735.1	InterPro:CheY-like_superfamily	GO:GO:0000155	GO:GO:0000160
GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0016772
GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	EnsemblPlantsGene:GSBRNA2T00070309001	InterPro:HATPase_C	InterPro:HATPase_C_sf
InterPro:HisK_dim/P	InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom	InterPro:IPR001789	InterPro:IPR005467	InterPro:IPR036890
PFAM:PF00072	PFAM:PF02518	PRINTS:PR00344	PFscan:PS50109	PFscan:PS50110	PFscan:PS51257
PANTHER:PTHR43719	SMART:SM00387	SMART:SM00388	SMART:SM00448	SUPFAM:SSF47384	SUPFAM:SSF52172
SUPFAM:SSF55874	InterPro:Sig_transdc_His_kin-like_C	InterPro:Sig_transdc_resp-reg_receiver	TMHMM:TMhelix	UniParc:UPI0004EF3756	SEG:seg

Description

BnaC04g29060DBnaC04g29060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FED9]

Coordinates

chrLK032026:+:506518..510879

Molecular Weight (calculated)

117936.0 Da

IEP (calculated)

8.689

GRAVY (calculated)

-0.262

Length

1065 amino acids

Sequence
(BLAST)

0001: MVNVRKFVTS RPIFVFFLLA FLVIVFGCIP VTIWLRTTKN VTEGIVFCTE GLRSSLVSDI ENIGKFTYQK TSSSTTGLAN IIDSYLTNND THFKKIQTQV
0101: APIPQVSQVS YISTDGLLFS YKTELNASVA VFANSSSGKG DYTWYTQTVD QITGRLTGNA TKSKPVDVTH KDWFQAAQRN HTTAFVGPGL GGEVNEAMFQ
0201: SVVSLYSKKG AVSLGFPVKT LIDSLNRLDL KGGELYLWTK EGTLIVPGRS LKATFFISNG SICFGRESSH CIPGNCSSRG YQVEIGRSKF QAFCSVLEVS
0301: GVPLRYTLMF PNKERGPSVG SASLYLLVAT MLLGLCWPLG FVACMVNAAG REMHMRATLI NQMEATQQAE RKSMNKSQAF ARASHDIRGS LAGITGLIDL
0401: CHDSEEVRHG SNLESRLKLV NGCTKDLLDL LNSVLDTSKI ESGKMQLKEE EFNLAKLVED VIDFFHPVAM KKGVDVVLDM HDGSVFKCSN VRGDGGKLKQ
0501: ILNNLVSNAV KFTVQGHISI RAWAQRTSSN AVLASDNEGG LSKFSKKSKD QGSMSNSVRN NGKMMEFVFE VDDTGKGIPM EMRKSVFENY VQVRETDQGQ
0601: QGTGLGLGIV QSLVRLMGGE IRIIDKAMGE KGTCFEFNVL LSAASESQVS RQDTEEGDHM HGAIKTSSGG SMSIRSMSPR LHNWLSSSPK QERSRVLLLM
0701: KDGERRRVTE KYIKSLGIKV TVVKKWEHLN HVLERLIGVS RQGSMGRNES LSSSSRELPL IGMDGIDSRS QTPKRTRHGF SPALLVVIDA ETRSFPELYD
0801: IVEQFRRGLH HGVSCKVVWL NDRGDGSLRG DISCSKPFHG SCLNKVLKML PEFGGTEPKE DKQGALKPSE DELLSGKRVM VVDDNHTTSL YATIKLKKMG
0901: ASEIKQCYNG KEAVRLVSEW LTQREHEEGG SSEMLLPFDY IFMDCQMPEM DGYEATREIR KMEEKYGAGL HIPIIAVSGH DHGSTEAIKT IEAGMDAFLE
1001: KNLNHDQLAK VIREITSKWE YASIRFTASW MNHLSAFSSS TNFRKQASSI KHFRPSLFFD ALTSD

Best Arabidopsis Sequence Match ( AT2G47430.1 )
(BLAST)

0001: MMVKVTKLVA SRPIVVFCVL AFLVVVFECI WISNWRTTTE NLVKEVASFT EDLRTSLVSE IENIGKFTYA KTNLSTIGLA RVIDSYITNN DTGFTEIQTQ
0101: IAPLLFVAYS TILQVSQVSY ISRDGLMFSY IAESNTSVAV FANSSSNSSR GDYTWYTQTV DQLTGRLNGN STKSQSLDVT HTDWFQAAQS NNYTTAFVGT
0201: SLGGEDNETL IQSVVSLYSK KGLVSLGFPV KTLTEVLNSL NLHGEELYMW TKDGTVLVRE GSLNDSFFIS NGSICFGRES NSLWSQCIPE NCSSSGYEVE
0301: IKRLRYQAFC SVIEVSGVPL RYTLMFPNKG GATRIKHQAE KAKYQLIVVM IFLGFGWPVW FVWFMMQATR REMHMRATLI NQMEATQQAE RKSMNKSQAF
0401: ANASHDIRGA LAGMKGLIDI CRDGVKPGSD VDTTLNQVNV CAKDLVALLN SVLDMSKIES GKMQLVEEDF NLSKLLEDVI DFYHPVAMKK GVDVVLDPHD
0501: GSVFKFSNVR GDSGRLKQIL NNLVSNAVKF TVDGHIAVRA WAQRPGSNSS VVLASYPKGV SKFVKSMFCK NKEESSTYET EISNSIRNNA NTMEFVFEVD
0601: DTGKGIPMEM RKSVFENYVQ VRETAQGHQG TGLGLGIVQS LVRLMGGEIR ITDKAMGEKG TCFQFNVLLT TLESPPVSDM KVRQEIEAGG DYVSTPNLGL
0701: TINTSLGGSM NIRNLSPRFN NCLSSSPKQE GSRVVLLLKN EERRRVTEKY IKNLGIKVTV VEKWEHLSYA LERLFGFSPQ SSMGRAECSL SCPSSRELPF
0801: IGMDGIDSRS QLPKRRSISF SAVVLLVIDA KTGPFFELCD IVKQFRRGLP HGISCKVVWL NESSTRVSER GDISCSRPLH GSRLMEVLKM LPEFGGTVLK
0901: EPPTELQRES LLRHSFVAER SPKHKVQEEG PSSMFNKKLG KRIMASTDSE SETRVKSVRT GRKPIGNPED EQETSKPSDD EFLRGKRVLV VDDNFISRKV
1001: ATGKLKKMGV SEVEQCDSGK EALRLVTEGL TQREEQGSVD KLPFDYIFMD CQMPEMDGYE ATREIRKVEK SYGVRTPIIA VSGHDPGSEE ARETIQAGMD
1101: AFLDKSLNQL ANVIREIESK RH

Arabidopsis Description

CKI1Histidine kinase CKI1 [Source:UniProtKB/Swiss-Prot;Acc:O22267]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.