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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX85268
CDX86370
CDY00096
CDY19992

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G17820.1 CDX85268 AT3G29350.1 10930573
AT2G17820.1 CDX86370 AT3G29350.1 10930573
AT2G17820.1 CDY00096 AT3G29350.1 10930573
AT2G17820.1 CDY19992 AT3G29350.1 10930573
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24380 Canola nucleus 98.07 97.99
AT2G17820.1 Thale cress cytosol, nucleus, plasma membrane 88.68 87.66
Solyc02g083670.2.1 Tomato cytosol 5.36 85.33
Solyc02g083680.1.1 Tomato plastid 49.2 66.78
VIT_04s0023g03680.t01 Wine grape mitochondrion 67.48 65.18
KRH76639 Soybean cytosol, endoplasmic reticulum, plasma membrane 66.3 63.43
PGSC0003DMT400009219 Potato plastid 63.87 62.92
KRH28811 Soybean cytosol, endoplasmic reticulum, nucleus 65.55 62.86
KRH08036 Soybean plastid 64.29 62.82
KRH69761 Soybean plastid 64.21 62.48
CDY64702 Canola mitochondrion 3.44 31.3
CDY21123 Canola cytosol 6.12 24.33
CDY12735 Canola endoplasmic reticulum, golgi, plasma membrane 19.95 22.35
CDY03102 Canola cytosol 1.34 22.22
CDY01193 Canola endoplasmic reticulum, golgi, plasma membrane 19.87 22.19
CDY49629 Canola cytosol 2.51 21.58
CDY03106 Canola cytosol 1.26 20.83
CDX80103 Canola endoplasmic reticulum, golgi, plasma membrane 19.36 20.75
CDY55381 Canola endoplasmic reticulum, plasma membrane, plastid 19.7 20.58
CDY66567 Canola cytosol 2.51 20.55
CDY03909 Canola endoplasmic reticulum, golgi, plasma membrane 17.02 20.28
CDY15717 Canola endoplasmic reticulum, golgi, plasma membrane 17.27 20.18
CDY17631 Canola cytosol, peroxisome, plasma membrane 17.27 19.58
CDY03101 Canola cytosol, peroxisome, plasma membrane 17.27 19.58
CDX93074 Canola plasma membrane 17.94 19.51
CDY50037 Canola endoplasmic reticulum, golgi, plasma membrane 17.94 19.47
CDY47297 Canola plasma membrane 17.94 18.62
CDX74635 Canola cytosol, golgi, plasma membrane 17.77 18.45
CDX80113 Canola plasma membrane 9.39 18.27
CDY49633 Canola cytosol 11.23 18.23
CDY63851 Canola plasma membrane 9.47 18.14
CDY07498 Canola cytosol 11.15 18.07
CDY67688 Canola nucleus 13.75 18.0
CDY40112 Canola nucleus 13.75 17.9
CDX69808 Canola nucleus 13.24 17.59
CDX97049 Canola nucleus 13.16 17.52
CDX78398 Canola cytosol 8.97 17.04
CDY30004 Canola plasma membrane 10.9 16.97
CDX90318 Canola cytosol 4.19 16.23
CDY70443 Canola plasma membrane 10.31 15.77
CDY35503 Canola plasma membrane 10.06 15.4
CDY67999 Canola plasma membrane 6.2 11.95
CDX70367 Canola endoplasmic reticulum, golgi 13.66 11.88
CDX86641 Canola endoplasmic reticulum 5.7 11.43
CDY70681 Canola endoplasmic reticulum 5.87 11.35
CDX78397 Canola cytosol 3.6 11.17
CDY15498 Canola plasma membrane 7.63 5.32
Protein Annotations
Gene3D:1.10.287.130Gene3D:3.30.565.10Gene3D:3.40.50.2300MapMan:35.1GO:A0A078G860UniProt:A0A078G860
EnsemblPlants:CDY20843ProteinID:CDY20843ProteinID:CDY20843.1InterPro:CheY-like_superfamilyGO:GO:0000155GO:GO:0000160
GO:GO:0003674GO:GO:0003824GO:GO:0004871GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0016772
GO:GO:0019538GO:GO:0023014GO:GO:0038023EnsemblPlantsGene:GSBRNA2T00013120001InterPro:HATPase_CInterPro:HATPase_C_sf
InterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:His_kinase_domInterPro:IPR001789InterPro:IPR005467InterPro:IPR036890
PFAM:PF00072PFAM:PF00512PFAM:PF02518PRINTS:PR00344PFscan:PS50109PFscan:PS50110
PANTHER:PTHR43711PANTHER:PTHR43711:SF1SMART:SM00387SMART:SM00388SMART:SM00448SUPFAM:SSF47384
SUPFAM:SSF52172SUPFAM:SSF55874InterPro:Sig_transdc_His_kin-like_CInterPro:Sig_transdc_resp-reg_receiverTMHMM:TMhelixUniParc:UPI0004EECEC8
SEG:seg:::::
Description
BnaC07g06920DBnaC07g06920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G860]
Coordinates
chrLK032112:-:618892..624928
Molecular Weight (calculated)
133835.0 Da
IEP (calculated)
6.774
GRAVY (calculated)
-0.219
Length
1193 amino acids
Sequence
(BLAST)
0001: MQRDSFSVSI ESLPDSPMGP RKKKITKLFN KMTEWVTPSR SNPESPRETR IIRGDVEQEQ FQYASSHCLS SYYSVFVVRL AIMVMLAILI GLLTILTWHF
0101: TRIYTKQSLQ NLANGLRYEL LQRPILRMWS VLNTTSELTT AQVKLSEYVI KKYDKPTTQE ELVEMYQAMK DVTWALFASA KALNAITINY RNGFVQAFHR
0201: DPASSSTFYI YSDLKNYSIS GTTGLEDVKM SMGHGWSNQT IHGNMTAIWY QQQLDPITGA KLGKPLQIPP DDLINIAGIS QVPDGEASWH VTVSKYMDSP
0301: LLSAALPVFD ASNKSIVAVV GVTTALYSVG QLMRELVEVH GGHIYLTSQE GYLLATSTDG PLLTNTSRGP KLMKAVDSKE WAIKTGAHWL EKTYGSHLPD
0401: VVHADNARLG DQQYYLDSFY LNLKRLPIIG VVIIPRKFIM GKVDERAFKT LVILISASVC IFFIGCVCIL ILTNGVSKEM KLRAELIRQL DARRRAEASS
0501: NYKSQFLANM SHELRTPMAA VIGLLDILIS DDCLSNEQYA TVTQIRKCST ALLRLLNNIL DLSKVESGKL VLEEAEFDLG RELEGLVDMF SVQCINHNVE
0601: TVLDLSDDMP TLVRGDSARL VQIFANLISN SIKFTTTGHI ILRGWCESVS SLHDETSLIV DRKKQWAPMK TKLVHHRNHL HKSCKNENKM VLWFEVDDTG
0701: CGIDPSKWDS VFESFEQADP STTRTHGGTG LGLCIVRNLV NKMGGDIKVV QKNGRGTIMR LHLILSIPDN AEQIYQPEFS KYGLVVLLSM SGSTARSIQS
0801: KWLRKHGIAT VEASDWNELT QIIRDLFETG SRENSFDSQH TIAESLRAEL SNIQEIRNPV FVIVVDIGVL DLTTDIWKEQ LNYLDRFSSK AKFAWLLKHD
0901: TSNTVKTELR RKGHVMMVNK PLYKAKMIQI LEAVIKNRRR GLRGNGSDDS HDCLEIDPTQ FDTCSSDDSS DTSVKPTVLP SPVLKNYLLD ITKSNDESTS
1001: MTQKKQEEEE DWKDRSNRLY SGVALDGKNQ KSLEGVRILL AEDTPVLQRV ATIMLEKMGA TVTAVWDGQQ AVDALNYKSI NAQEHNNLSE EEETNPQSDL
1101: PNSSPYDLIL MDCQQMPKMD GYEATKAIRR AEIGTSLHVP IVALTAHAMS SDEAKCLEVG MDAYLTKPID RKLMVSTILS LTKPSTVLTS FSD
Best Arabidopsis Sequence Match ( AT2G17820.1 )
(BLAST)
0001: MRGDSFSMSI ENLPDSPMGS RKKKMQIRKV FDKMTEWVTP WRSNLESPRE MMILRGDVEQ DEFQYASSHC LSSYYSVFVV RLAIMVMLAI LIGLLTVLTW
0101: HFTRIYTKQS LQTLAYGLRY ELLQRPVLRM WSVLNTTSEL TTAQVKLSEY VIKKYDKPTT QEELVEMYQA MKDVTWALFA SAKALNAITI NYRNGFVQAF
0201: HRDPASSSTF YIFSDLKNYS ISGTGPEDVS GWNNKSIHGN MSAIWYQQQL DPVTGENLGK PLKIPPDDLI NIAGISQVPD GEASWHVTVS KYMDSPLLSA
0301: ALPVFDASNK SIVAVVGVTT ALYSVGQLMR DLVEVHGGHI YLTSQEGYLL ATSTDGPLLK NTSNGPQLMK ATDSEEWVIK SGAQWLEKTY GSKRPHVVHA
0401: ENVKLGDQRY YIDSFYLNLK RLPIVGVVII PRKFIMGKVD ERAFKTLIIL ISASVCIFFI GCVCILILTN GVSKEMKLRA ELIRQLDARR RAEASSNYKS
0501: QFLANMSHEL RTPMAAVIGL LDILISDDCL SNEQYATVTQ IRKCSTALLR LLNNILDLSK VESGKLVLEE AEFDLGRELE GLVDMFSVQC INHNVETVLD
0601: LSDDMPALVR GDSARLVQIF ANLISNSIKF TTTGHIILRG WCENINSLHD EMSVSVDRRK PWAPMKTKQV QHRNHLQKSC KNANKMVLWF EVDDTGCGID
0701: PSKWDSVFES FEQADPSTTR THGGTGLGLC IVRNLVNKMG GEIKVVQKNG LGTLMRLYLI LSTPDTVDQN IQPDFSKYGL VVMLSMYGST ARMITSKWLR
0801: KHGIATVEAS DWNELTQIIR DLLETGSRDN SFDSQHNISD PLRAELSNIV EIKNPVFVIV VDIGVLDLTT NIWKEQLNYL DRFSNKAKFA WLLKHDTSNT
0901: VKTELRRKGH VMMVNKPLYK AKMIQILEAV IKNRKRGLCN DLRNRGNGSD ESHDCLEIDP TQFDTCSSDD SSETSGEKQV DKSVKPSTLH SPVLKNYLID
1001: ATTSNDDSTS ASMTQKNPEE EDWKDRLYSG IALDGKNQKS LEGIRILLAE DTPVLQRVAT IMLEKMGATV TAVWDGQQAV DSLNYKSINA QAPTEEHKSF
1101: EEETANKVTT RETSLRNSSP YDLILMDCQM PKMDGYEATK AIRRAEIGTE LHIPIVALTA HAMSSDEAKC LEVGMDAYLT KPIDRKLMVS TILSLTKPSA
1201: FQTSLSA
Arabidopsis Description
AHK1Histidine kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXL4]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.