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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • golgi 5
  • plasma membrane 6
  • endoplasmic reticulum 7
  • vacuole 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX86641
CDY07498
CDY15498
CDY49629
CDY49633
CDY66567
CDY67999
CDY70681

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04310.1 CDX86641 AT1G04310.1 18577522
AT1G04310.1 CDY15498 AT1G04310.1 18577522
AT1G04310.1 CDY67999 AT1G04310.1 18577522
AT1G04310.1 CDY70681 AT1G04310.1 18577522
AT1G04310.1 CDY07498 AT1G66340.1 18577522
AT1G04310.1 CDY49629 AT1G66340.1 18577522
AT1G04310.1 CDY49633 AT1G66340.1 18577522
AT1G04310.1 CDY66567 AT1G66340.1 18577522
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY67999 Canola plasma membrane 97.24 96.93
CDX86641 Canola endoplasmic reticulum 78.93 81.85
AT1G04310.1 Thale cress endoplasmic reticulum 82.5 78.91
KRG90373 Soybean plasma membrane 43.92 59.3
KRH34517 Soybean plasma membrane 52.84 44.23
KRG92290 Soybean plasma membrane 54.3 43.96
HORVU6Hr1G080170.1 Barley plasma membrane 13.29 43.62
VIT_05s0049g00090.t01 Wine grape plasma membrane 53.48 43.19
CDY70443 Canola plasma membrane 52.19 41.28
CDY35503 Canola plasma membrane 52.03 41.21
PGSC0003DMT400041983 Potato plasma membrane 48.78 39.55
Solyc06g053710.2.1 Tomato plasma membrane 48.78 39.55
GSMUA_Achr11P... Banana plasma membrane 45.22 36.81
Zm00001d051889_P002 Maize endoplasmic reticulum 44.73 36.6
GSMUA_Achr8P14350_001 Banana endoplasmic reticulum 44.89 36.59
CDY30004 Canola plasma membrane 45.06 36.29
OQU85974 Sorghum plasma membrane 45.38 36.08
TraesCS6B01G439600.1 Wheat mitochondrion 45.22 35.59
TraesCS6D01G383600.1 Wheat mitochondrion 45.22 35.59
TraesCS2D01G000500.1 Wheat plasma membrane 44.08 35.05
TraesCS2B01G023800.1 Wheat plasma membrane 43.6 34.98
TraesCS2A01G000200.1 Wheat plasma membrane 43.92 34.83
EES10426 Sorghum plasma membrane 43.6 34.8
Os04t0169100-02 Rice plasma membrane 42.95 34.73
Zm00001d004372_P003 Maize plasma membrane 43.27 34.68
HORVU0Hr1G001750.2 Barley endoplasmic reticulum 43.44 34.49
TraesCS6A01G399400.2 Wheat mitochondrion, plasma membrane 45.06 34.36
HORVU2Hr1G000030.1 Barley plasma membrane 42.79 34.06
PGSC0003DMT400044244 Potato plasma membrane 41.49 34.0
Solyc09g089610.2.1 Tomato endoplasmic reticulum 41.17 33.69
HORVU6Hr1G091700.6 Barley cytosol, mitochondrion, plasma membrane 44.57 33.45
Zm00001d025050_P001 Maize cytosol, golgi, plasma membrane 42.46 32.59
Os02t0820900-03 Rice mitochondrion 43.27 31.94
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, plasma membrane 33.55 31.75
CDX80113 Canola plasma membrane 30.79 31.0
CDY63851 Canola plasma membrane 30.79 30.5
TraesCS6D01G266200.1 Wheat plasma membrane 35.66 30.3
TraesCS6B01G314600.1 Wheat plasma membrane 35.49 30.04
TraesCS6A01G285800.1 Wheat plasma membrane 35.33 29.95
TraesCS6A01G329400.1 Wheat plasma membrane 35.33 29.86
CDY15498 Canola plasma membrane 82.66 29.82
HORVU6Hr1G071860.2 Barley plasma membrane 34.68 29.64
TraesCS6D01G308300.1 Wheat plasma membrane 34.85 29.53
TraesCS6B01G360200.1 Wheat cytosol, endoplasmic reticulum, golgi 34.52 29.26
Os07t0259100-01 Rice mitochondrion, plasma membrane 35.33 28.06
CDY49633 Canola cytosol 33.06 27.76
CDY07498 Canola cytosol 33.06 27.72
EES06508 Sorghum mitochondrion, plasma membrane 34.04 25.39
HORVU6Hr1G080180.1 Barley cytosol 20.42 25.05
Zm00001d053594_P001 Maize plasma membrane 32.58 25.03
Zm00001d021687_P001 Maize plasma membrane 33.55 24.21
KXG36402 Sorghum plasma membrane 33.39 24.09
CDY21123 Canola cytosol 6.48 13.33
CDX90318 Canola cytosol 6.16 12.34
CDX78398 Canola cytosol 10.86 10.67
CDX78397 Canola cytosol 6.48 10.39
KRG90374 Soybean cytosol 3.73 10.27
CDY03101 Canola cytosol, peroxisome, plasma membrane 15.23 8.94
CDY17631 Canola cytosol, peroxisome, plasma membrane 15.23 8.94
CDY47297 Canola plasma membrane 16.21 8.7
CDX97049 Canola nucleus 12.48 8.59
CDX69808 Canola nucleus 12.48 8.57
CDX93074 Canola plasma membrane 15.23 8.57
CDY50037 Canola endoplasmic reticulum, golgi, plasma membrane 15.23 8.55
CDX74635 Canola cytosol, golgi, plasma membrane 15.88 8.53
CDY15717 Canola endoplasmic reticulum, golgi, plasma membrane 14.1 8.52
CDY03909 Canola endoplasmic reticulum, golgi, plasma membrane 13.78 8.49
CDY64702 Canola mitochondrion 1.78 8.4
CDY67688 Canola nucleus 12.32 8.34
CDY40112 Canola nucleus 12.32 8.3
CDY20843 Canola nucleus 11.35 5.87
CDY24380 Canola nucleus 11.35 5.86
CDX70367 Canola endoplasmic reticulum, golgi 11.99 5.39
CDY01193 Canola endoplasmic reticulum, golgi, plasma membrane 9.24 5.34
CDY12735 Canola endoplasmic reticulum, golgi, plasma membrane 9.08 5.26
CDY55381 Canola endoplasmic reticulum, plasma membrane, plastid 9.56 5.17
CDX80103 Canola endoplasmic reticulum, golgi, plasma membrane 9.24 5.12
CDY66567 Canola cytosol 0.65 2.74
CDY49629 Canola cytosol 0.32 1.44
CDY03102 Canola cytosol 0.0 0.0
CDY03106 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:1.10.287.130MapMan:11.5.2.1GO:A0A078JYQ6UniProt:A0A078JYQ6EnsemblPlants:CDY70681ProteinID:CDY70681
ProteinID:CDY70681.1ncoils:CoilInterPro:GAFGO:GO:0000155GO:GO:0000160GO:GO:0003674
GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016740GO:GO:0019538
GO:GO:0023014GO:GO:0038023EnsemblPlantsGene:GSBRNA2T00005307001InterPro:HisK_dim/PInterPro:HisK_dim/P_sfPFAM:PF01590
PANTHER:PTHR43719PANTHER:PTHR43719:SF6SMART:SM00065SUPFAM:SSF47384SUPFAM:SSF55781SignalP:SignalP-TM
TMHMM:TMhelixUniParc:UPI0004EECB6CSEG:seg:::
Description
BnaCnng69330DBnaCnng69330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYQ6]
Coordinates
chrLK042926:+:500..2647
Molecular Weight (calculated)
68427.3 Da
IEP (calculated)
8.126
GRAVY (calculated)
0.074
Length
617 amino acids
Sequence
(BLAST)
001: MLKKLLVHVL LFFFLTASVA GSLSICNCDD EDSFFTFEAI LQSQKAGDFL IAVAYFSIPI ELLYFVSRTN VPSPYNWVVC EFIAFIVLCG MTHLLAGFTY
101: GPHWAWVTTA VTVFKMLTGI VSFLTAISLV TLLPLLLKAK VREFMLNKKT RELGREVGII MKQTETSLHV RMLTSKIRTS LDRHTILYTT LVELSKTLGL
201: KNCAVWIPNE IKTEMNLTHE LRPGHRDDNA GGGGGYGGGF SIPITESDVV RIKRSEEVNM LNPGSALASV TSRGKPDSQT VGIRVPMLRV CNFKGGTPEA
301: IHMCYAILVC VLPSRSWTYQ ELEIVKVVAD QVAVAISHAV ILEESQLMRE KLAEQNRALQ VARENALRAN QAKAAFEEMM GDAMRRPVRS ILGLLPMITR
401: DGGLQENQKV IVDAMGRTSE LLLHLVSNAG DITRPGETHC FSLRSVAKET ACLARCLCVG NGFGFSTEVD RALPDYVVGD ARKVFQVVLH MLEGLVNRKI
501: RGNVTFLVSP ESSEVDSQEA VWRQCYSKEY IKVKFGFEVE TSSVPSFNSS EDIVKLTQGN IRVVEDGSRL VKSLSVVFRF QLRGSMLSQG GGYSGETFKT
601: ATPPSTSNDH WRQEEIR
Best Arabidopsis Sequence Match ( AT1G04310.2 )
(BLAST)
001: MLKTLLVQWL VFFFFFLIGS VVTAAEDDGS LSLCNCDDED SLFSYETILN SQKVGDFLIA IAYFSIPIEL VYFVSRTNVP SPYNWVVCEF IAFIVLCGMT
101: HLLAGFTYGP HWPWVMTAVT VFKMLTGIVS FLTALSLVTL LPLLLKAKVR EFMLSKKTRE LDREVGIIMK QTETSLHVRM LTTKIRTSLD RHTILYTTLV
201: ELSKTLGLKN CAVWIPNEIK TEMNLTHELR PRIDDENENE HFGGYAGFSI PISESDVVRI KRSEEVNMLS PGSVLASVTS RGKSGPTVGI RVPMLRVCNF
301: KGGTPEAIHM CYAILVCVLP LRQPQAWTYQ ELEIVKVVAD QVAVAISHAV ILEESQLMRE KLAEQNRALQ VARENALRAN QAKAAFEQMM SDAMRCPVRS
401: ILGLLPLILQ DGKLPENQTV IVDAMRRTSE LLVQLVNNAG DINNGTIRAA ETHYFSLHSV VKESACVARC LCMANGFGFS AEVYRALPDY VVGDDRKVFQ
501: AILHMLGVLM NRKIKGNVTF WVFPESGNSD VSERKDIQEA VWRHCYSKEY MEVRFGFEVT AEGEESSSSS SGSNLEEEEE NPSLNACQNI VKYMQGNIRV
601: VEDGLGLVKS VSVVFRFQLR RSMMSRGGGY SGETFRTSTP PSTSH
Arabidopsis Description
ERS2Ethylene response sensor 2 [Source:UniProtKB/Swiss-Prot;Acc:P93825]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.