CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 4
golgi 4
plasma membrane 6
endoplasmic reticulum 5
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90373
KRG90374
KRG92290
KRG96132
KRH20027
KRH27542
KRH32650
KRH34517
KRH36433
KRH67846

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04310.1	KRG90373	AT1G04310.1	18577522
AT1G04310.1	KRG90374	AT1G04310.1	18577522
AT1G04310.1	KRG92290	AT1G04310.1	18577522
AT1G04310.1	KRH34517	AT1G04310.1	18577522
AT1G04310.1	KRH27542	AT1G66340.1	18577522
AT1G04310.1	KRH36433	AT1G66340.1	18577522
AT3G23150.1	KRH27542	AT1G66340.1	18577522
AT3G23150.1	KRH36433	AT1G66340.1	18577522
AT3G23150.1	KRG96132	AT5G03730.1	12177468
AT3G23150.1	KRH20027	AT5G03730.1	12177468
AT3G23150.1	KRH32650	AT5G03730.1	12177468
AT3G23150.1	KRH67846	AT5G03730.1	12177468

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34517	Soybean	plasma membrane	94.09	97.29
KRG90373	Soybean	plasma membrane	49.87	83.15
KRG90374	Soybean	cytosol	21.52	73.21
VIT_05s0049g00090.t01	Wine grape	plasma membrane	72.7	72.51
KRH31729	Soybean	endoplasmic reticulum	21.0	66.95
Solyc06g053710.2.1	Tomato	plasma membrane	64.3	64.39
PGSC0003DMT400041983	Potato	plasma membrane	64.04	64.13
Bra023756.1-P	Field mustard	plasma membrane	63.91	62.44
CDY70443	Canola	plasma membrane	63.78	62.31
CDY35503	Canola	plasma membrane	63.39	62.0
AT3G23150.1	Thale cress	endoplasmic reticulum, plasma membrane	61.55	60.67
KRG92613	Soybean	plasma membrane	57.61	57.31
KRH34165	Soybean	plasma membrane	57.61	57.24
KRH68803	Soybean	plasma membrane	56.96	56.51
KRG97057	Soybean	plasma membrane	53.81	56.09
KRH04719	Soybean	extracellular	10.63	55.86
Bra015303.1-P	Field mustard	endoplasmic reticulum	44.62	55.19
CDX86641	Canola	endoplasmic reticulum	43.04	55.13
CDY67999	Canola	plasma membrane	44.36	54.6
CDY70681	Canola	endoplasmic reticulum	43.96	54.3
KRG98373	Soybean	extracellular	12.47	54.29
AT1G04310.1	Thale cress	endoplasmic reticulum	44.75	52.87
PGSC0003DMT400044244	Potato	plasma membrane	51.57	52.19
Solyc09g089610.2.1	Tomato	endoplasmic reticulum	51.18	51.72
KRH27542	Soybean	cytosol	37.93	39.11
KRH36433	Soybean	cytosol	37.8	38.92
KRG96477	Soybean	cytosol	32.28	38.68
KRH68220	Soybean	cytosol	32.28	38.68
Bra030564.1-P	Field mustard	plasma membrane	49.08	22.22
CDY15498	Canola	plasma membrane	49.48	22.05
KRH49704	Soybean	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	18.5	14.29
KRH42680	Soybean	plasma membrane	19.16	14.17
KRH58780	Soybean	endoplasmic reticulum, golgi, plasma membrane	19.03	14.08
KRH70376	Soybean	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	18.64	13.94
KRH60456	Soybean	golgi	17.85	13.45
KRH41756	Soybean	golgi	17.72	13.29
KRG88576	Soybean	cytosol	14.04	12.68
KRH52290	Soybean	nucleus	15.75	12.04
KRH61623	Soybean	cytosol	15.62	12.02
KRH74010	Soybean	mitochondrion, plasma membrane	19.16	11.96
KRH14106	Soybean	mitochondrion	19.16	11.92
KRH15703	Soybean	cytosol	15.22	11.46
KRH49494	Soybean	mitochondrion	9.32	11.4
KRH05331	Soybean	cytosol	15.09	11.37
KRH08036	Soybean	plastid	16.01	9.99
KRH69761	Soybean	plastid	15.88	9.87
KRH68254	Soybean	cytosol	13.65	9.85
KRH28811	Soybean	cytosol, endoplasmic reticulum, nucleus	15.75	9.65
KRH76639	Soybean	cytosol, endoplasmic reticulum, plasma membrane	15.75	9.62

Protein Annotations

Gene3D:1.10.287.130	EntrezGene:100787425	MapMan:11.5.2.1	Gene3D:3.30.450.40	Gene3D:3.30.565.10	Gene3D:3.40.50.2300
EMBL:ACUP02012736	InterPro:CheY-like_superfamily	ncoils:Coil	InterPro:ETR	InterPro:GAF	InterPro:GAF-like_dom_sf
EnsemblPlantsGene:GLYMA_20G202200	GO:GO:0000155	GO:GO:0000160	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004673	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009873
GO:GO:0009987	GO:GO:0010105	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0018106	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	GO:GO:0038199
GO:GO:0046872	GO:GO:0050896	GO:GO:0051740	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P
InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom	InterPro:IPR001789	InterPro:IPR005467	InterPro:IPR029016	InterPro:IPR036890
UniProt:K7N4P0	ProteinID:KRG92288.1	ProteinID:KRG92289.1	EnsemblPlants:KRG92290	ProteinID:KRG92290	ProteinID:KRG92290.1
ProteinID:KRG92291.1	ProteinID:KRG92292.1	PFAM:PF00072	PFAM:PF00512	PFAM:PF01590	PFAM:PF02518
PIRSF:PIRSF026389	PFscan:PS50109	PFscan:PS50110	PANTHER:PTHR43719	PANTHER:PTHR43719:SF6	SMART:SM00065
SMART:SM00388	SMART:SM00448	SUPFAM:SSF47384	SUPFAM:SSF52172	SUPFAM:SSF55781	SUPFAM:SSF55874
InterPro:Sig_transdc_resp-reg_receiver	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000233DBA3	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:+:43915579..43920057

Molecular Weight (calculated)

84441.5 Da

IEP (calculated)

7.933

GRAVY (calculated)

0.090

Length

762 amino acids

Sequence
(BLAST)

001: MLKAVASGLV ITSILICVSA NDNGFPRCNC DDEASLWTIE SILECQRVGD FLIAVAYFSI PIELLYFISC SNVPFKWVLI QFIAFIVLCG LTHLLNGWTY
101: GPHTFQLMVA LTVSKILTAL VSCATAITLI TLIPLLLKVK VREFMLKKKT WDLGREVDHI MRQKEAAMHV RMLTQEIRKS LDRHTILYTT LVELSKTLGL
201: QNCAVWMPNV DKTEMNLTHE LNGRNFNLTI RITDPDVVRI KGSDGVNILS SDSALAVGSR GVSGEAGPVA AIRMPMLRVC NFKGGTPELR QACYAILVLI
301: LPSGDNQEPR SWSNQELEII KVVADQVAVA LSHAAILEES QLMREKLEEQ NRALQQAKRN ALMASQARNA FQKVMSDGMR RPMHSILGLL SMIQDDKLKS
401: EQKLIVDAML RTSNVLSNLI NDAMDNSTKD EGRFPLEIRS FGLHSMLKEA ACLSKCMCVY KGFGFMVEVE KCLPDNVMGD ERRVFQVILH MVGNLLEHNH
501: GGGILVYRVF AETGSQGRSD KGWTTWRPSS SSGDVNIRFE IGINSSDSEV GSSISSGFGG RKYSSDRVGG RLSFSICKRV VQLMQGNIWL VPCNHGFPQS
601: MTLLLRFQLR PSISIAISDP GEGSERTDSN SMLRNLQVLL VENDDVNRAV TQRLLQKLGC VVTPVASGFE CLTVIGPAGC SIQVILLDLH MPDLDGFEVA
701: TRIRKFRSGN QPMIVALTAS AEEDLWERCM QVGINGVIRK PVLLHGIASE LRRILMQGNN VL

Best Arabidopsis Sequence Match ( AT3G23150.1 )
(BLAST)

001: MVKEIASWLL ILSMVVFVSP VLAINGGGYP RCNCEDEGNS FWSTENILET QRVSDFLIAV AYFSIPIELL YFVSCSNVPF KWVLFEFIAF IVLCGMTHLL
101: HGWTYSAHPF RLMMAFTVFK MLTALVSCAT AITLITLIPL LLKVKVREFM LKKKAHELGR EVGLILIKKE TGFHVRMLTQ EIRKSLDRHT ILYTTLVELS
201: KTLGLQNCAV WMPNDGGTEM DLTHELRGRG GYGGCSVSME DLDVVRIRES DEVNVLSVDS SIARASGGGG DVSEIGAVAA IRMPMLRVSD FNGELSYAIL
301: VCVLPGGTPR DWTYQEIEIV KVVADQVTVA LDHAAVLEES QLMREKLAEQ NRALQMAKRD ALRASQARNA FQKTMSEGMR RPMHSILGLL SMIQDEKLSD
401: EQKMIVDTMV KTGNVMSNLV GDSMDVPDGR FGTEMKPFSL HRTIHEAACM ARCLCLCNGI RFLVDAEKSL PDNVVGDERR VFQVILHIVG SLVKPRKRQE
501: GSSLMFKVLK ERGSLDRSDH RWAAWRSPAS SADGDVYIRF EMNVENDDSS SQSFASVSSR DQEVGDVRFS GGYGLGQDLS FGVCKKVVQL IHGNISVVPG
601: SDGSPETMSL LLRFRRRPSI SVHGSSESPA PDHHAHPHSN SLLRGLQVLL VDTNDSNRAV TRKLLEKLGC DVTAVSSGFD CLTAIAPGSS SPSTSFQVVV
701: LDLQMAEMDG YEVAMRIRSR SWPLIVATTV SLDEEMWDKC AQIGINGVVR KPVVLRAMES ELRRVLLQAD QLL

Arabidopsis Description

ETR2Ethylene receptor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPQ2]
SUBAcon: [plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.