CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95451
KRH31957
KRH67127
KRH71497

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17820.1	KRG95451	AT3G29350.1	10930573
AT2G17820.1	KRH31957	AT3G29350.1	10930573
AT2G17820.1	KRH67127	AT3G29350.1	10930573
AT2G17820.1	KRH71497	AT3G29350.1	10930573

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76639	Soybean	cytosol, endoplasmic reticulum, plasma membrane	95.58	95.35
Solyc02g083670.2.1	Tomato	cytosol	5.31	88.0
KRH08036	Soybean	plastid	79.18	80.67
KRH69761	Soybean	plastid	78.46	79.61
VIT_04s0023g03680.t01	Wine grape	mitochondrion	70.42	70.93
Solyc02g083680.1.1	Tomato	plastid	48.55	68.71
PGSC0003DMT400009219	Potato	plastid	64.71	66.47
AT2G17820.1	Thale cress	cytosol, nucleus, plasma membrane	63.67	65.62
CDY24380	Canola	nucleus	62.94	65.58
CDY20843	Canola	nucleus	62.86	65.55
Bra002095.1-P	Field mustard	nucleus	62.78	65.41
KRG98373	Soybean	extracellular	4.18	29.71
KRG90374	Soybean	cytosol	4.02	22.32
KRH68254	Soybean	cytosol	18.89	22.25
KRH42680	Soybean	plasma membrane	17.68	21.36
KRH49704	Soybean	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	16.72	21.07
KRH58780	Soybean	endoplasmic reticulum, golgi, plasma membrane	17.36	20.97
KRH31729	Soybean	endoplasmic reticulum	4.02	20.92
KRH70376	Soybean	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	16.8	20.51
KRH60456	Soybean	golgi	16.64	20.47
KRH41756	Soybean	golgi	16.48	20.18
KRH27542	Soybean	cytosol	11.5	19.35
KRG88576	Soybean	cytosol	13.1	19.31
KRH36433	Soybean	cytosol	11.41	19.19
KRH74010	Soybean	mitochondrion, plasma membrane	17.36	17.69
KRH68220	Soybean	cytosol	9.0	17.61
KRG96477	Soybean	cytosol	8.92	17.45
KRH14106	Soybean	mitochondrion	17.12	17.39
KRH61623	Soybean	cytosol	13.83	17.37
KRH52290	Soybean	nucleus	13.91	17.35
KRH68803	Soybean	plasma membrane	10.21	16.54
KRG92613	Soybean	plasma membrane	10.05	16.32
KRH34165	Soybean	plasma membrane	10.05	16.3
KRH05331	Soybean	cytosol	13.18	16.22
KRH34517	Soybean	plasma membrane	9.57	16.15
KRH49494	Soybean	mitochondrion	8.04	16.05
KRH15703	Soybean	cytosol	13.02	16.01
KRG92290	Soybean	plasma membrane	9.65	15.75
KRG97057	Soybean	plasma membrane	8.92	15.18
KRG90373	Soybean	plasma membrane	4.1	11.16
KRH04719	Soybean	extracellular	0.8	6.9

Protein Annotations

Gene3D:1.10.287.130	EntrezGene:100807543	Gene3D:3.30.565.10	Gene3D:3.40.50.2300	MapMan:35.1	EMBL:ACUP02006765
InterPro:CheY-like_superfamily	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G078300	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674
GO:GO:0003824	GO:GO:0004871	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0016772	GO:GO:0019538
GO:GO:0023014	GO:GO:0038023	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:HisK_dim/P_sf
InterPro:His_kinase_dom	UniProt:I1LI26	InterPro:IPR001789	InterPro:IPR005467	InterPro:IPR036890	EnsemblPlants:KRH28811
ProteinID:KRH28811	ProteinID:KRH28811.1	ProteinID:KRH28812.1	PFAM:PF00072	PFAM:PF00512	PFAM:PF02518
PRINTS:PR00344	PFscan:PS50109	PFscan:PS50110	PANTHER:PTHR43711	PANTHER:PTHR43711:SF1	SMART:SM00387
SMART:SM00388	SMART:SM00448	SUPFAM:SSF47384	SUPFAM:SSF52172	SUPFAM:SSF55874	InterPro:Sig_transdc_His_kin-like_C
InterPro:Sig_transdc_resp-reg_receiver	TMHMM:TMhelix	UniParc:UPI00023CC907	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:+:5897790..5907341

Molecular Weight (calculated)

139377.0 Da

IEP (calculated)

6.767

GRAVY (calculated)

-0.257

Length

1244 amino acids

Sequence
(BLAST)

0001: MAENKDEIYS ECSPGSNSPM GSKCRYLFHR LCGCDTSWNK NSTPKSRRIF HRDVEKEEFQ YASSHCLSSY YSVFVVRLAI MVMLAILIGL LTILTWHFTK
0101: IYTAKSLRSL AYGLRYELLQ RPVLRMWNIL NSTSEITTAQ VKLSQYVIRR HSNPATQAEQ VELYEAMRAV TWALFASRKA LNSITINYKN GFVQAFHRDL
0201: KDNNTFYIYS DLSNYSMGAS NSNEVNSISK HRAWDDKGLH GNYSSIWYRE PLDPVSGEKI GKAMKIAPED LINIAGLSQV PDGVASWHVA VSKFTDSPLL
0301: SAALPVWDSS NKTIMAVVGV TTALYSVGQL MRELVEMHSG HMYLTSQEGY LLATSTSAPL LETSTKPPKL KMAVDCEDNV IRLGAEWLQR TYGNNFPPSH
0401: EIHVENVKLG HQRYYIDSFF LNLKRLPLVG VIIIPRKYIM GQVDERAYKT LVILISASLC ILVIGCVCIL ILTNGVSKEM NLRAELINQL EARRKAEASS
0501: NYKSQFLANM SHELRTPMAA VIGLLDILIS DDCLTNEQYS TVTQIRKCST ALLRLLNNIL DLSKVESGKL VLEDAEFDLG RELEGLVDMF SVQCMNHNVE
0601: TVLDLSDDMP KVVRGDSARV VQIFANLINN SIKFTPSGHI ILRGWCENQN SYVGSPLDQK KSRSLQKCIE RPNANHAKRT SVKDNKVILW FEVDDTGCGI
0701: DPSKWDSVFE SFEQADPSTT RLHGGTGLGL CIVRNLVNKM GGDIRVVKKE GSGTLMRLCL LLSAPMDVTE QQCAVDLTDN GLVVLLALHG NMGRLITSKW
0801: LQKNGVCTME ASDWNGLTQI LRELFHAGSS VHNTDFEAHY PAKEELKSKL LNIRDMRNPG FVIVVDIGLL DLSTDIWKEQ FNFLHRYFGR AKFVWMLNHD
0901: TSNTIKMELR RKGHILMVNK PLYKAKMIHI LEAVINERNL ELQKKNMIAP RTTMKEGDLH EFLEIDSTHF DGASSDDSDI SEISGSNPVS ANGDKPVEKL
1001: ENSHPSSPHH MNNCLVRLTN ENECLEEHNL RKEESSSPSS SSATEDNQPK SLSTKESSSI STEDQDEDSE CGDTNRVTSS SKAVVDGKKS LEGLKILLAE
1101: DTPVLQRVAT IMLEKMGADV VAVGDGQQAV DALNCMFTAE DCRRESLQKE RNTRSQTEIS TCRPYDLILM DCQMPKMDGY EATKAIRKSE VGTSRHIPIV
1201: ALTAHAMSCD EAKCLEVGMD AYLTKPIDFK MMVSTILSLT KRTS

Best Arabidopsis Sequence Match ( AT2G17820.1 )
(BLAST)

0001: MRGDSFSMSI ENLPDSPMGS RKKKMQIRKV FDKMTEWVTP WRSNLESPRE MMILRGDVEQ DEFQYASSHC LSSYYSVFVV RLAIMVMLAI LIGLLTVLTW
0101: HFTRIYTKQS LQTLAYGLRY ELLQRPVLRM WSVLNTTSEL TTAQVKLSEY VIKKYDKPTT QEELVEMYQA MKDVTWALFA SAKALNAITI NYRNGFVQAF
0201: HRDPASSSTF YIFSDLKNYS ISGTGPEDVS GWNNKSIHGN MSAIWYQQQL DPVTGENLGK PLKIPPDDLI NIAGISQVPD GEASWHVTVS KYMDSPLLSA
0301: ALPVFDASNK SIVAVVGVTT ALYSVGQLMR DLVEVHGGHI YLTSQEGYLL ATSTDGPLLK NTSNGPQLMK ATDSEEWVIK SGAQWLEKTY GSKRPHVVHA
0401: ENVKLGDQRY YIDSFYLNLK RLPIVGVVII PRKFIMGKVD ERAFKTLIIL ISASVCIFFI GCVCILILTN GVSKEMKLRA ELIRQLDARR RAEASSNYKS
0501: QFLANMSHEL RTPMAAVIGL LDILISDDCL SNEQYATVTQ IRKCSTALLR LLNNILDLSK VESGKLVLEE AEFDLGRELE GLVDMFSVQC INHNVETVLD
0601: LSDDMPALVR GDSARLVQIF ANLISNSIKF TTTGHIILRG WCENINSLHD EMSVSVDRRK PWAPMKTKQV QHRNHLQKSC KNANKMVLWF EVDDTGCGID
0701: PSKWDSVFES FEQADPSTTR THGGTGLGLC IVRNLVNKMG GEIKVVQKNG LGTLMRLYLI LSTPDTVDQN IQPDFSKYGL VVMLSMYGST ARMITSKWLR
0801: KHGIATVEAS DWNELTQIIR DLLETGSRDN SFDSQHNISD PLRAELSNIV EIKNPVFVIV VDIGVLDLTT NIWKEQLNYL DRFSNKAKFA WLLKHDTSNT
0901: VKTELRRKGH VMMVNKPLYK AKMIQILEAV IKNRKRGLCN DLRNRGNGSD ESHDCLEIDP TQFDTCSSDD SSETSGEKQV DKSVKPSTLH SPVLKNYLID
1001: ATTSNDDSTS ASMTQKNPEE EDWKDRLYSG IALDGKNQKS LEGIRILLAE DTPVLQRVAT IMLEKMGATV TAVWDGQQAV DSLNYKSINA QAPTEEHKSF
1101: EEETANKVTT RETSLRNSSP YDLILMDCQM PKMDGYEATK AIRRAEIGTE LHIPIVALTA HAMSSDEAKC LEVGMDAYLT KPIDRKLMVS TILSLTKPSA
1201: FQTSLSA

Arabidopsis Description

AHK1Histidine kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXL4]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.