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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 6
  • golgi 4
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES06508
EES10426
KXG30326
KXG36402
OQU85974
OQU89015

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04310.1 EES06508 AT1G04310.1 18577522
AT1G04310.1 EES10426 AT1G04310.1 18577522
AT1G04310.1 KXG36402 AT1G04310.1 18577522
AT1G04310.1 OQU85974 AT1G04310.1 18577522
AT3G23150.1 KXG30326 AT5G03730.1 12177468
AT3G23150.1 OQU89015 AT5G03730.1 12177468
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d004372_P003 Maize plasma membrane 91.98 92.34
Zm00001d025050_P001 Maize cytosol, golgi, plasma membrane 94.18 90.55
Os04t0169100-02 Rice plasma membrane 81.5 82.57
TraesCS2D01G000500.1 Wheat plasma membrane 79.95 79.64
TraesCS2B01G023800.1 Wheat plasma membrane 79.04 79.45
TraesCS2A01G000200.1 Wheat plasma membrane 79.82 79.31
HORVU0Hr1G001750.2 Barley endoplasmic reticulum 78.53 78.12
HORVU2Hr1G000030.1 Barley plasma membrane 77.88 77.68
GSMUA_Achr11P... Banana plasma membrane 63.13 64.38
GSMUA_Achr8P14350_001 Banana endoplasmic reticulum 62.48 63.8
VIT_14s0081g00630.t01 Wine grape plasma membrane 54.08 55.0
VIT_05s0049g00090.t01 Wine grape plasma membrane 53.17 53.8
OQU85974 Sorghum plasma membrane 52.26 52.06
PGSC0003DMT400073847 Potato plasma membrane 51.36 51.76
Solyc05g055070.2.1 Tomato plasma membrane 49.55 51.41
Solyc11g006180.1.1 Tomato plasma membrane 50.58 50.98
PGSC0003DMT400060160 Potato endoplasmic reticulum 49.94 50.59
Solyc06g053710.2.1 Tomato plasma membrane 49.29 50.07
PGSC0003DMT400041983 Potato plasma membrane 49.03 49.8
Bra040134.1-P Field mustard plasma membrane 49.03 49.48
CDY30004 Canola plasma membrane 48.9 49.35
AT3G04580.1 Thale cress plasma membrane 48.64 49.09
Solyc06g036450.1.1 Tomato cytosol 6.34 49.0
Solyc11g065590.1.1 Tomato cytosol 5.69 48.89
Solyc06g051610.1.1 Tomato cytosol 10.48 48.8
CDY35503 Canola plasma membrane 48.25 47.88
CDY70443 Canola plasma membrane 47.99 47.56
Bra023756.1-P Field mustard plasma membrane 47.99 47.56
CDY64702 Canola mitochondrion 8.02 47.33
AT3G23150.1 Thale cress endoplasmic reticulum, plasma membrane 47.09 47.09
PGSC0003DMT400044244 Potato plasma membrane 44.24 45.42
Solyc12g044870.1.1 Tomato cytosol 9.7 45.18
Solyc09g089610.2.1 Tomato endoplasmic reticulum 43.98 45.09
Solyc09g082910.1.1 Tomato cytosol 9.44 43.98
CDY70681 Canola endoplasmic reticulum 34.8 43.6
CDY67999 Canola plasma membrane 34.8 43.46
Bra015303.1-P Field mustard endoplasmic reticulum 34.54 43.34
EES06508 Sorghum mitochondrion, plasma membrane 46.18 43.17
CDX86641 Canola endoplasmic reticulum 32.99 42.86
AT1G04310.1 Thale cress endoplasmic reticulum 35.19 42.17
KRH31729 Soybean endoplasmic reticulum 12.94 41.84
Solyc04g049990.1.1 Tomato cytosol 6.99 41.22
KXG36402 Sorghum plasma membrane 44.89 40.58
Solyc04g049320.1.1 Tomato cytosol, plastid, vacuole 5.56 39.09
Solyc09g011680.1.1 Tomato cytosol 5.17 38.46
Solyc01g014770.1.1 Tomato cytosol 6.6 38.06
Solyc04g025660.1.1 Tomato cytosol 5.05 37.5
Solyc08g068360.1.1 Tomato cytosol 5.69 36.67
EER91030 Sorghum cytosol 29.88 36.38
CDY21123 Canola cytosol 14.1 36.33
EES19059 Sorghum plasma membrane 28.46 34.81
Solyc12g062760.1.1 Tomato cytosol 3.88 34.09
Solyc04g064840.1.1 Tomato endoplasmic reticulum 7.89 33.7
Solyc12g038690.1.1 Tomato cytosol 2.72 32.81
Solyc09g065310.1.1 Tomato cytosol 2.59 31.25
Solyc12g027610.1.1 Tomato cytosol 7.63 30.26
Bra030564.1-P Field mustard plasma membrane 37.9 17.41
CDY15498 Canola plasma membrane 38.42 17.37
EER93561 Sorghum cytosol 17.08 13.25
KXG34012 Sorghum cytosol, peroxisome, plasma membrane 17.21 13.23
EES07292 Sorghum mitochondrion 16.04 12.74
OQU76804 Sorghum nucleus 13.84 11.16
EER94128 Sorghum extracellular, plasma membrane 9.83 10.23
KXG19481 Sorghum plasma membrane 13.07 9.26
KXG26059 Sorghum endoplasmic reticulum, extracellular, golgi 6.73 9.19
Protein Annotations
Gene3D:1.10.287.130MapMan:11.5.2.1Gene3D:3.30.450.40Gene3D:3.30.565.10Gene3D:3.40.50.2300EntrezGene:8066019
UniProt:C5YC98InterPro:CheY-like_superfamilyncoils:CoilEnsemblPlants:EES10426ProteinID:EES10426ProteinID:EES10426.1
InterPro:ETRInterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004673GO:GO:0004674GO:GO:0004871GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0005975GO:GO:0006139GO:GO:0006355GO:GO:0006464
GO:GO:0006468GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009719GO:GO:0009723GO:GO:0009873GO:GO:0009987GO:GO:0010105GO:GO:0016020
GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0018106GO:GO:0019538
GO:GO:0023014GO:GO:0038023GO:GO:0038199GO:GO:0046872GO:GO:0050896GO:GO:0051740
GO:GO:2000904InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/P_sfInterPro:His_kinase_domInterPro:IPR001789
InterPro:IPR005467InterPro:IPR029016InterPro:IPR036890PFAM:PF00072PFAM:PF01590PFAM:PF02518
PIRSF:PIRSF026389PFscan:PS50109PFscan:PS50110PANTHER:PTHR43719PANTHER:PTHR43719:SF6SMART:SM00065
SMART:SM00448EnsemblPlantsGene:SORBI_3006G018800SUPFAM:SSF47384SUPFAM:SSF52172SUPFAM:SSF55781SUPFAM:SSF55874
unigene:Sbi.19647InterPro:Sig_transdc_resp-reg_receiverSignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0001A86A03RefSeq:XP_002446098.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr6:+:3178404..3183167
Molecular Weight (calculated)
85959.0 Da
IEP (calculated)
7.390
GRAVY (calculated)
0.088
Length
773 amino acids
Sequence
(BLAST)
001: MVVGTALLRG GVSISISSVW ILLFLSSLLL LSPSAASVDF SHCGGCDDAD DGALSSAYNI LQCQKVSDFL IAAAYFSIPL ELLYFATCSD LFPLKWIVLQ
101: FGAFIVLCGL THLITVFTYE PHSFHLVLAL TVAKFLTALV SFATAITLLT LIPQLLRVKV RENFLMNKAR ELDREVGMMK RKEEASWHVR MLTQEIRKSL
201: DRHTILYTTM VELSKALELQ NCAVWMPNET RSEMILTHQL RERDIMDPQN RSIPIDDPDV LEIKATKDAK VIGPDSALGV ASRSKLEAGP VAAIRMPMLR
301: VSNFKGGTPE VMQTSYAILV LVLPNDASLG WGRRELEIVE VVADQVAVAL SHAALLEESQ LMREKLAEQH RDLLRAKHEA MRAGEARNSF QTAMYDGMRR
401: PMHSILGLVS MMQQESMNPE QRLVMDAIAK TSSVASTLMN DVMQTSTMNC EHLSLVRRPV NLHSFIKEAV GVVRCLTGCK GVEFEFQVDN SLPERIIGDE
501: KRVFHIVLHM VGTLINRCNA GCISLYVSGH NEVEERHNHD WMLRRANFSG GYVCVKFEIR VRKSKDNLLS SSSSEIRHGS KPNNSEMGLS FNMCKKIVQM
601: MNGNIWSVSD SKCIGETIML VLQFQLQPVT PVSGASSDLY RSSAIPNFNG LRVLLADSDD TNRAVTHRLL EKLGCRVLSV ASGVQCMSSF AAESSFQLVI
701: LDLAMQTMDG FEVARAIRKF SSNSWLPLIV ALAARIDDNI RDRCQRSGIN GLIQKPVTLA ALGDELYRVL QNN
Best Arabidopsis Sequence Match ( AT3G04580.2 )
(BLAST)
001: MLRSLGLGLL LFALLALVSG DNDYVSCNCD DEGFLSVHTI LECQRVSDLL IAIAYFSIPL ELLYFISFSN VPFKWVLVQF IAFIVLCGMT HLLNAWTYYG
101: PHSFQLMLWL TIFKFLTALV SCATAITLLT LIPLLLKWKV RELYLKQNVL ELNEEVGLMK RQKEMSVQVR MLTREIRKSL DKHMILRTTL VELSKILDLQ
201: NSAVWMPNEN RTEMHLTHEL RANPMRSFRV IPINDPDVVQ VRETKVVTIL RKNSVLAVES SGCGGSEEFG PVAAIRMPML HGLNFKGGTP EFVDTPYAIM
301: VLVLPSANSR VWTDKEIEIA EVVADQVAVA ISHASVLEES QLMREKLGIQ NRALLRAKQN AMMASQARNT CQKVMSHGMR RPMHTILGLL SMFQSESMSL
401: DQKIIVDALM KTSTVLSALI NDVIDISPKD NGKSALEVKR FQLHSLIREA ACVAKCLSVY KGYGFEMDVQ TRLPNLVVGD EKRTFQLVMY MLGYILDMTD
501: GGKTVTFRVI CEGTGTSQDK SKRETGMWKS HMSDDSLGVK FEVEINEIQN PPLDGSAMAM RHIPNRRYHS NGIKEGLSLG MCRKLAQMMQ GNIWISPKSH
601: GQTQSMQLVL RFQTRPSIRR SILAGNAPEL QHPNSNSILR GLRITLADDD DVNRTVTKRL LEKLGCEVTA VSSGFECLNA LSNVEMSYRV VILDLQMPEM
701: DGFEVAMKIR KFCGHHWPLI IALTASTEDH VRERCLQMGM NGMIQKPVLL HVMASELRRA LQTASE
Arabidopsis Description
EIN4EIN4 [Source:UniProtKB/TrEMBL;Acc:A0A178VKQ4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.