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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:
  • nucleus 1
  • mitochondrion 3
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plasma membrane
Any Predictor:mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:plasma membrane
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
EES06508
EES10426
KXG30326
KXG36402
OQU85974
OQU89015

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04310.1 EES06508 AT1G04310.1 18577522
AT1G04310.1 EES10426 AT1G04310.1 18577522
AT1G04310.1 KXG36402 AT1G04310.1 18577522
AT1G04310.1 OQU85974 AT1G04310.1 18577522
AT3G23150.1 KXG30326 AT5G03730.1 12177468
AT3G23150.1 OQU89015 AT5G03730.1 12177468
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d053594_P001 Maize plasma membrane 83.68 86.18
HORVU6Hr1G080170.1 Barley plasma membrane 13.18 57.98
TraesCS6D01G266200.1 Wheat plasma membrane 46.67 53.17
HORVU6Hr1G071860.2 Barley plasma membrane 46.19 52.91
TraesCS6D01G308300.1 Wheat plasma membrane 46.31 52.61
TraesCS6A01G285800.1 Wheat plasma membrane 46.31 52.61
TraesCS6A01G329400.1 Wheat plasma membrane 46.19 52.33
TraesCS6B01G314600.1 Wheat plasma membrane 45.95 52.13
Os07t0259100-01 Rice mitochondrion, plasma membrane 48.85 51.99
TraesCS6B01G360200.1 Wheat cytosol, endoplasmic reticulum, golgi 45.47 51.65
HORVU6Hr1G080180.1 Barley cytosol 30.83 50.7
KXG36402 Sorghum plasma membrane 51.75 50.06
EES10426 Sorghum plasma membrane 43.17 46.18
GSMUA_Achr11P... Banana plasma membrane 38.69 42.22
Solyc06g051610.1.1 Tomato cytosol 8.46 42.17
GSMUA_Achr8P14350_001 Banana endoplasmic reticulum 38.57 42.14
VIT_14s0081g00630.t01 Wine grape plasma membrane 36.76 40.0
Solyc06g036450.1.1 Tomato cytosol 4.84 40.0
VIT_05s0049g00090.t01 Wine grape plasma membrane 36.88 39.92
Solyc04g049990.1.1 Tomato cytosol 6.29 39.69
Solyc12g044870.1.1 Tomato cytosol 7.86 39.16
OQU85974 Sorghum plasma membrane 36.52 38.92
PGSC0003DMT400041983 Potato plasma membrane 35.55 38.63
Solyc06g053710.2.1 Tomato plasma membrane 35.31 38.37
PGSC0003DMT400073847 Potato plasma membrane 35.43 38.2
Solyc05g055070.2.1 Tomato plasma membrane 34.22 37.99
Solyc11g006180.1.1 Tomato plasma membrane 35.19 37.94
Solyc11g065590.1.1 Tomato cytosol 4.11 37.78
PGSC0003DMT400060160 Potato endoplasmic reticulum 34.7 37.61
Solyc09g082910.1.1 Tomato cytosol 7.5 37.35
CDY30004 Canola plasma membrane 34.22 36.95
AT3G23150.1 Thale cress endoplasmic reticulum, plasma membrane 34.46 36.87
Bra040134.1-P Field mustard plasma membrane 34.1 36.81
Bra023756.1-P Field mustard plasma membrane 34.46 36.54
CDY35503 Canola plasma membrane 34.22 36.33
CDY70443 Canola plasma membrane 34.22 36.28
AT3G04580.1 Thale cress plasma membrane 33.49 36.16
CDY64702 Canola mitochondrion 5.68 35.88
Solyc01g014770.1.1 Tomato cytosol 5.8 35.82
PGSC0003DMT400044244 Potato plasma membrane 32.41 35.59
Solyc09g089610.2.1 Tomato endoplasmic reticulum 32.04 35.15
Solyc09g011680.1.1 Tomato cytosol 4.35 34.62
Bra015303.1-P Field mustard endoplasmic reticulum 25.76 34.58
CDY67999 Canola plasma membrane 25.88 34.57
Solyc04g049320.1.1 Tomato cytosol, plastid, vacuole 4.59 34.55
CDY70681 Canola endoplasmic reticulum 25.39 34.04
CDX86641 Canola endoplasmic reticulum 23.94 33.28
KRH31729 Soybean endoplasmic reticulum 9.55 33.05
AT1G04310.1 Thale cress endoplasmic reticulum 25.51 32.71
CDY21123 Canola cytosol 11.73 32.33
Solyc12g062760.1.1 Tomato cytosol 3.39 31.82
Solyc12g038690.1.1 Tomato cytosol 2.42 31.25
Solyc04g025660.1.1 Tomato cytosol 3.87 30.77
Solyc08g068360.1.1 Tomato cytosol 4.35 30.0
EER91030 Sorghum cytosol 22.85 29.76
Solyc09g065310.1.1 Tomato cytosol 2.3 29.69
Solyc04g064840.1.1 Tomato endoplasmic reticulum 6.41 29.28
EES19059 Sorghum plasma membrane 22.13 28.96
Solyc12g027610.1.1 Tomato cytosol 6.29 26.67
Bra030564.1-P Field mustard plasma membrane 27.33 13.43
CDY15498 Canola plasma membrane 27.69 13.39
EER93561 Sorghum cytosol 14.63 12.15
EES07292 Sorghum mitochondrion 13.66 11.61
KXG34012 Sorghum cytosol, peroxisome, plasma membrane 13.54 11.14
OQU76804 Sorghum nucleus 10.64 9.18
EER94128 Sorghum extracellular, plasma membrane 7.86 8.75
KXG19481 Sorghum plasma membrane 10.88 8.25
KXG26059 Sorghum endoplasmic reticulum, extracellular, golgi 4.59 6.71
Protein Annotations
MapMan:11.5.2.1Gene3D:3.30.450.40Gene3D:3.40.50.2300UniProt:C5XY13InterPro:CheY-like_superfamilyEnsemblPlants:EES06508
ProteinID:EES06508ProteinID:EES06508.2InterPro:ETRInterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155
GO:GO:0000160GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004673GO:GO:0004871
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0006464GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009873GO:GO:0009987GO:GO:0010105
GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0018106
GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0038199GO:GO:0046872GO:GO:0050896
GO:GO:0051740InterPro:IPR001789InterPro:IPR029016PFAM:PF00072PFAM:PF01590PIRSF:PIRSF026389
PFscan:PS50110PANTHER:PTHR43719PANTHER:PTHR43719:SF20SMART:SM00065SMART:SM00448EnsemblPlantsGene:SORBI_3004G091600
SUPFAM:SSF52172unigene:Sbi.21077InterPro:Sig_transdc_resp-reg_receiverTMHMM:TMhelixUniParc:UPI0007F1DD44SEG:seg
Description
hypothetical protein
Coordinates
chr4:+:7779458..7782304
Molecular Weight (calculated)
88792.2 Da
IEP (calculated)
9.143
GRAVY (calculated)
0.067
Length
827 amino acids
Sequence
(BLAST)
001: MERTLRCILH CMQKAKAHMA ALARRCGGCD GREEAAVEAM LQWQKVSDLL IAASLLSIPL ELLYFATCAA LAPLRRVLLQ LGTFIVMCGV THLLSALAYD
101: RPGSRAVLVA LTTAKVLGAV ATSAAAVSLP ILFPRLLRLK VRESFLRTKA RQLDRDLATV RRREETVWRV VRAVTHHIRD SIDARTILHT TMLQLAAALG
201: LSNCAVWMPP LQQRAGTGTG GGVLQLTHQL LPDEDDDKVL HRSGGGATAR AISVRDPDVA AVLASKDAKV LSRPGSALKA ASCRSLPRAG AAAAIRIPNF
301: PIRPASTSEL LSYAILVMVL RADDEDDRHH RRGPPTATGW SNQDLEIVQA VADQVAVALS HAAALEESQL IRHKLAEQHG ALLRARSELA AATKARDTAH
401: GAMRNAMGKP MHAVVGVLSV MQEQEAAAMR PEQRLIVDAI ARTSAVSSTL METLPRMLDV RDPPLSASPP TPPTLVSRRP FELRSLIRDA AFAARCLSGC
501: RGLGFSHQLE ASSLPEWVVG DDKRVFHLVL HMVGALLSRC HGHVAAGRLL SFSVRSCSSI AGEHHHQDWI PSPLRPISFT GGNQVFVRFQ IGLTKSDPPG
601: SSPASRPPQC SLSSPDSGGG ATMRLTFAMC KRIVEMMNGD MWWASESEGL GETMTCILRF QQHQPLNPHV PGSGTYRIGA GASSATTAPH LHFNGLRILL
701: ADSDAMSMEV TRKLLERLGC QVLPVSSGAH CLSLLGGGAA DPSFELVVLD LHGHGGAAAM DGFEVALRIR ELSRSTCWLL VLVAVEAGGV DDGVRDLCRR
801: AGVDGLIHKP ITLPALGAQL RRVLQNN
Best Arabidopsis Sequence Match ( AT3G23150.1 )
(BLAST)
001: MVKEIASWLL ILSMVVFVSP VLAINGGGYP RCNCEDEGNS FWSTENILET QRVSDFLIAV AYFSIPIELL YFVSCSNVPF KWVLFEFIAF IVLCGMTHLL
101: HGWTYSAHPF RLMMAFTVFK MLTALVSCAT AITLITLIPL LLKVKVREFM LKKKAHELGR EVGLILIKKE TGFHVRMLTQ EIRKSLDRHT ILYTTLVELS
201: KTLGLQNCAV WMPNDGGTEM DLTHELRGRG GYGGCSVSME DLDVVRIRES DEVNVLSVDS SIARASGGGG DVSEIGAVAA IRMPMLRVSD FNGELSYAIL
301: VCVLPGGTPR DWTYQEIEIV KVVADQVTVA LDHAAVLEES QLMREKLAEQ NRALQMAKRD ALRASQARNA FQKTMSEGMR RPMHSILGLL SMIQDEKLSD
401: EQKMIVDTMV KTGNVMSNLV GDSMDVPDGR FGTEMKPFSL HRTIHEAACM ARCLCLCNGI RFLVDAEKSL PDNVVGDERR VFQVILHIVG SLVKPRKRQE
501: GSSLMFKVLK ERGSLDRSDH RWAAWRSPAS SADGDVYIRF EMNVENDDSS SQSFASVSSR DQEVGDVRFS GGYGLGQDLS FGVCKKVVQL IHGNISVVPG
601: SDGSPETMSL LLRFRRRPSI SVHGSSESPA PDHHAHPHSN SLLRGLQVLL VDTNDSNRAV TRKLLEKLGC DVTAVSSGFD CLTAIAPGSS SPSTSFQVVV
701: LDLQMAEMDG YEVAMRIRSR SWPLIVATTV SLDEEMWDKC AQIGINGVVR KPVVLRAMES ELRRVLLQAD QLL
Arabidopsis Description
ETR2Ethylene receptor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPQ2]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.