Factsheet for TraesCS5B01G001600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G302000.1
TraesCS4B01G012100.1
TraesCS4D01G010200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40940.1	TraesCS4A01G302000.1	AT5G03730.1	9560288
AT2G40940.1	TraesCS4B01G012100.1	AT5G03730.1	9560288
AT2G40940.1	TraesCS4D01G010200.1	AT5G03730.1	9560288

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G002600.1	Wheat	cytosol, plasma membrane, vacuole	98.89	98.42
TraesCS5D01G002600.1	Wheat	cytosol, plasma membrane, vacuole	98.73	98.26
HORVU5Hr1G000590.2	Barley	cytosol, mitochondrion, plastid	97.78	91.94
TraesCS4B01G039300.1	Wheat	cytosol, golgi, plasma membrane	86.51	85.83
TraesCS5B01G527300.1	Wheat	cytosol, golgi, plasma membrane	48.1	80.8
GSMUA_Achr11P...	Banana	cytosol	80.95	80.31
GSMUA_Achr11P...	Banana	cytosol	44.92	76.9
GSMUA_Achr5P21290_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.05	75.39
VIT_07s0005g00850.t01	Wine grape	cytosol	76.03	75.31
KRG96477	Soybean	cytosol	72.06	71.38
KRH68220	Soybean	cytosol	72.06	71.38
CDX80113	Canola	plasma membrane	68.89	70.8
Bra004449.1-P	Field mustard	plasma membrane	68.1	70.21
AT2G40940.1	Thale cress	cytosol, nucleus, plasma membrane	68.1	69.98
TraesCS1B01G127000.1	Wheat	cytosol, golgi, plasma membrane	70.63	69.75
CDY63851	Canola	plasma membrane	68.89	69.66
Solyc09g075440.2.1	Tomato	plasma membrane	68.73	68.19
PGSC0003DMT400081399	Potato	cytosol, plasma membrane, vacuole	68.41	67.87
TraesCS2B01G023800.1	Wheat	plasma membrane	37.62	30.82
TraesCS6B01G439600.1	Wheat	mitochondrion	37.14	29.85
TraesCS6B01G360200.1	Wheat	cytosol, endoplasmic reticulum, golgi	31.59	27.34
TraesCS6B01G314600.1	Wheat	plasma membrane	30.95	26.75
TraesCS2B01G495500.1	Wheat	nucleus	15.08	15.65
TraesCS6B01G342700.1	Wheat	mitochondrion	20.95	13.61
TraesCS4B01G050200.1	Wheat	cytosol	21.43	13.39
TraesCS3B01G469000.1	Wheat	cytosol, golgi, mitochondrion, peroxisome	21.11	13.18
TraesCS7B01G405100.1	Wheat	nucleus	17.78	11.56
TraesCS5B01G533800.1	Wheat	endoplasmic reticulum, golgi	12.86	11.04
TraesCS7B01G049400.1	Wheat	plasma membrane	15.56	9.38
TraesCS7B01G049100.1	Wheat	plasma membrane	13.97	7.98

Protein Annotations

Gene3D:1.10.287.130	MapMan:11.5.2.1	Gene3D:3.30.450.40	Gene3D:3.30.565.10	InterPro:GAF	InterPro:GAF-like_dom_sf
GO:GO:0000155	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0016772	GO:GO:0019538	GO:GO:0038023
InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom	InterPro:IPR005467
InterPro:IPR029016	InterPro:IPR036890	PFAM:PF00512	PFAM:PF01590	PFAM:PF02518	PRINTS:PR00344
PFscan:PS50109	PANTHER:PTHR24423	PANTHER:PTHR24423:SF615	SMART:SM00065	SMART:SM00387	SMART:SM00388
SUPFAM:SSF47384	SUPFAM:SSF55781	SUPFAM:SSF55874	InterPro:Sig_transdc_His_kin-like_C	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5B01G001600
EnsemblPlants:TraesCS5B01G001600.1	TIGR:cd00075	TIGR:cd00082	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:-:2559369..2562577

Molecular Weight (calculated)

69862.3 Da

IEP (calculated)

7.342

GRAVY (calculated)

0.132

Length

630 amino acids

Sequence
(BLAST)

001: MEGCDCIEPC WPTDELLIKY QYISDFFIAL AYFSIPLELI YFVKKSSFFP YRWVLIQFGA FIVLCGATHL INLWTFTMHT KTVAIVMTVA KVSTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKKKADELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILMTTLVEL GRTLGLEECA LWMPSRSGSS LQLTHTLRHP
201: IPGGSSVQIN LPVVNQVFSS NRAIIVPHTS PLARIRPVQG RYVPPEVAAV RVPLLHLSNF QINDWPELSA KSYAIMVLML PSDSARKWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMDQNVAL DLARREAEMA IRARNDFLAV MNHEMRTPMN AIIALSSLLL ETELTPEQRL MVETVLKSSN LLATLINDVL
401: DLSKLEDGSF ELDISAFNLH AVFKEVMSFV KPIAAIKKLS VSAMLSPDLP LSAIGDEKRL MQTILNVCGN AVKFTKEGHI SLVASVVKSD ALREFRSTDF
501: HPVATDGHFY VKVQVKDTGC GISPQDVSHV FTKFAHTQSG GNQGYNGSGL GLAICKRFVS LMGGHIWLES DGAGKGCTAT FVVKLGACDA YQQPAVPLVW
601: PSHAGSDPSG PARREERGLS NLKPRYQRSI

Best Arabidopsis Sequence Match ( AT1G66340.1 )
(BLAST)

001: MEVCNCIEPQ WPADELLMKY QYISDFFIAI AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRHQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYMLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETILKSSN LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD TRAADFFVVP
501: TGSHFYLRVK VKDSGAGINP QDIPKIFTKF AQTQSLATRS SGGSGLGLAI SKRFVNLMEG NIWIESDGLG KGCTAIFDVK LGISERSNES KQSGIPKVPA
601: IPRHSNFTGL KVLVMDENGV SRMVTKGLLV HLGCEVTTVS SNEECLRVVS HEHKVVFMDV CMPGVENYQI ALRIHEKFTK QRHQRPLLVA LSGNTDKSTK
701: EKCMSFGLDG VLLKPVSLDN IRDVLSDLLE PRVLYEGM

Arabidopsis Description

ETR1Ethylene receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P49333]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.