Factsheet for HORVU7Hr1G097840.6

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G010280.1
HORVU1Hr1G041480.1
HORVU1Hr1G041490.1
HORVU1Hr1G060100.2
HORVU2Hr1G005650.6
HORVU3Hr1G057280.2
HORVU5Hr1G011280.4
HORVU5Hr1G059250.1
HORVU6Hr1G021570.1
HORVU7Hr1G036210.1
HORVU7Hr1G097840.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	HORVU3Hr1G057280.2	AT1G01260.1	21798944
AT1G51600.1	HORVU0Hr1G010280.1	AT2G02560.1	21798944
AT1G51600.1	HORVU1Hr1G041480.1	AT2G02560.1	21798944
AT1G51600.1	HORVU1Hr1G041490.1	AT2G02560.1	21798944
AT1G51600.1	HORVU2Hr1G005650.6	AT2G02560.1	21798944
AT1G51600.1	HORVU5Hr1G011280.4	AT2G02560.1	21798944
AT1G51600.1	HORVU5Hr1G059250.1	AT2G02560.1	21798944
AT1G51600.1	HORVU7Hr1G036210.1	AT2G02560.1	21798944
AT1G51600.1	HORVU6Hr1G021570.1	AT3G21175.1	21798944
AT1G51600.1	HORVU7Hr1G097840.6	AT3G21175.1	21798944
AT1G51600.1	HORVU1Hr1G060100.2	AT5G58575.1	21798944
AT3G21175.1	HORVU6Hr1G021570.1	AT3G21175.1	21798944
AT3G21175.1	HORVU7Hr1G097840.6	AT3G21175.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G416000.2	Wheat	nucleus	74.36	89.23
TraesCS7B01G323600.1	Wheat	nucleus	69.02	82.82
TraesCS7A01G423100.2	Wheat	nucleus	64.1	75.57
GSMUA_Achr2P04520_001	Banana	nucleus	20.94	60.49
GSMUA_Achr3P05620_001	Banana	nucleus	30.56	57.2
EER88899	Sorghum	nucleus	40.81	54.26
Zm00001d014656_P003	Maize	nucleus	39.74	51.96
GSMUA_Achr9P13870_001	Banana	nucleus	33.12	51.16
Zm00001d036494_P001	Maize	nucleus	38.68	50.56
HORVU6Hr1G021570.1	Barley	nucleus	34.19	47.48
Bra014292.1-P	Field mustard	nucleus	25.0	45.0
CDY46552	Canola	nucleus	24.79	44.44
VIT_09s0054g00440.t01	Wine grape	nucleus	28.21	44.15
AT1G51600.1	Thale cress	nucleus	27.35	42.38
CDY50073	Canola	nucleus	25.85	42.01
GSMUA_Achr10P...	Banana	nucleus	28.85	41.54
CDY19576	Canola	nucleus	26.5	41.47
AT3G21175.1	Thale cress	nucleus	25.64	40.4
Bra031258.1-P	Field mustard	nucleus	27.14	39.56
CDY52949	Canola	nucleus	23.72	37.5
KRH44616	Soybean	extracellular, vacuole	26.71	37.43
HORVU4Hr1G010840.15	Barley	nucleus	22.22	34.78
HORVU4Hr1G004080.9	Barley	nucleus	23.93	34.78
Bra023900.1-P	Field mustard	nucleus	25.64	33.06
CDY37312	Canola	cytosol, nucleus, plastid	25.64	32.7
CDY27538	Canola	nucleus	25.85	31.35

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:A0A287XHW1	InterPro:CCT_domain	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872
EnsemblPlantsGene:HORVU7Hr1G097840	EnsemblPlants:HORVU7Hr1G097840.6	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088
PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017
PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF296	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716
InterPro:Tify_dom	UniParc:UPI000B46D981	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:

Description

No Description!

Coordinates

chrchr7H:-:593706735..593712979

Molecular Weight (calculated)

50343.5 Da

IEP (calculated)

5.660

GRAVY (calculated)

-0.758

Length

468 amino acids

Sequence
(BLAST)

001: MLARLENILT LEWDATLARN GTAEIRPKTT RARRSPHLSA RVHFHPPNQN RIAILGLPHP PSHPHPRRPI RSLAMAQHDG KPYQPRRGPE RPPQPAEDPA
101: APAPAPAAAD AVIDHLAAVA AEAEALNASI EAVAAEAEAM NTYEHAHEQE QEQGQEMEEE EEEEEEEEME EEEEDEGEGD GQHEHGQHGG NGEAVPMDAE
201: AAAQAAAAAA AGAQLDPHGA MVTAIVPPAT GNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELNPGIG AGASSSTPYS KRLNFPHRVA SLMRFREKRK
301: ERNFDKKIRY TVRKEVALRM QRNRGQFTSS KPKPDEGTSE LATADGSPNW GSVEGRPPSA AACHHCGTNA HNTPMMRRGP EGPRTLCNAC GLMWANKGML
401: RDLAKSTPQS LQMMATAPND SQNGNTLSQQ NGNALSQQNG NAAIVPFAEQ QTLAQATDAN GHSHGSST

Best Arabidopsis Sequence Match ( AT1G51600.2 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.