CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92072
KRG97199
KRG98249
KRH01878
KRH06456
KRH16959
KRH29099
KRH30221
KRH44616
KRH47899
KRH51281
KRH53667
KRH64261
KRH68922
KRH75237

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	KRG97199	AT1G01260.1	21798944
AT1G51600.1	KRH06456	AT1G01260.1	21798944
AT1G51600.1	KRH47899	AT1G01260.1	21798944
AT1G51600.1	KRH68922	AT1G01260.1	21798944
AT1G51600.1	KRH01878	AT2G02560.1	21798944
AT1G51600.1	KRH51281	AT2G02560.1	21798944
AT1G51600.1	KRH75237	AT2G02560.1	21798944
AT1G51600.1	KRG92072	AT2G47450.1	21798944
AT1G51600.1	KRH29099	AT2G47450.1	21798944
AT1G51600.1	KRH44616	AT3G21175.1	21798944
AT1G51600.1	KRG98249	AT5G58575.1	21798944
AT1G51600.1	KRH30221	AT5G58575.1	21798944
AT3G21175.1	KRH44616	AT3G21175.1	21798944
AT3G21175.1	KRH16959	AT3G49580.1	21798944
AT3G21175.1	KRH53667	AT3G49580.1	21798944
AT3G21175.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46552	Canola	nucleus	43.11	55.17
GSMUA_Achr2P04520_001	Banana	nucleus	26.65	54.94
Bra014292.1-P	Field mustard	nucleus	42.22	54.23
VIT_09s0054g00440.t01	Wine grape	nucleus	47.9	53.51
AT1G51600.1	Thale cress	nucleus	48.2	53.31
AT3G21175.1	Thale cress	nucleus	45.21	50.84
CDY50073	Canola	nucleus	42.22	48.96
CDY19576	Canola	nucleus	43.41	48.49
CDY52949	Canola	nucleus	42.22	47.64
GSMUA_Achr3P05620_001	Banana	nucleus	35.33	47.2
Bra031258.1-P	Field mustard	nucleus	41.62	43.3
GSMUA_Achr9P13870_001	Banana	nucleus	39.22	43.23
Bra023900.1-P	Field mustard	nucleus	42.22	38.84
KRH16867	Soybean	nucleus	35.33	38.44
Os02t0148500-01	Rice	nucleus	37.72	38.41
CDY37312	Canola	cytosol, nucleus, plastid	41.92	38.15
GSMUA_Achr10P...	Banana	nucleus	36.83	37.85
KRH72475	Soybean	nucleus	35.03	37.74
CDY27538	Canola	nucleus	42.22	36.53
KRH62254	Soybean	nucleus	33.53	36.25
KRH52967	Soybean	nucleus	32.93	36.18
EER88899	Sorghum	nucleus	36.83	34.94
Zm00001d036494_P001	Maize	nucleus	36.83	34.36
TraesCS6A01G118800.2	Wheat	nucleus	34.43	33.72
TraesCS6B01G146800.2	Wheat	nucleus	34.13	33.33
TraesCS6D01G108700.2	Wheat	nucleus	34.13	33.33
TraesCS7B01G323600.1	Wheat	nucleus	38.62	33.08
TraesCS7D01G416000.2	Wheat	nucleus	38.62	33.08
Zm00001d014656_P003	Maize	nucleus	35.03	32.68
HORVU6Hr1G021570.1	Barley	nucleus	32.93	32.64
TraesCS7A01G423100.2	Wheat	nucleus	38.62	32.49
KRH52968	Soybean	nucleus	32.34	30.77
KRH62255	Soybean	nucleus	30.84	29.43
KRH49841	Soybean	nucleus	31.14	29.3
KRH42075	Soybean	nucleus	31.14	29.05
HORVU7Hr1G097840.6	Barley	nucleus	37.43	26.71

Protein Annotations

EntrezGene:100812262	MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:A0A0R0IW01	EMBL:ACUP02004945	InterPro:CCT_domain
EnsemblPlantsGene:GLYMA_08G221800	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR010399
InterPro:IPR010402	InterPro:IPR013088	EnsemblPlants:KRH44616	ProteinID:KRH44616	ProteinID:KRH44616.1	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017	PFscan:PS51257
PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF282	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716
SignalP:SignalP-noTM	InterPro:Tify_dom	UniParc:UPI0003DE8CFE	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:18005616..18011105

Molecular Weight (calculated)

36689.1 Da

IEP (calculated)

7.039

GRAVY (calculated)

-0.656

Length

334 amino acids

Sequence
(BLAST)

001: MLSLKCFKCL QSLFVLSVAK GGFPCCWCFG SSCIMDGIHG GDSRIHITDG QHPIHVPYVQ EHEHHGLHHI SNGNGIDDDH NDGGDTNCGG SESMEGEVPS
101: NHGNLPDNHA VMMDQGGDSG DQLTLSFQGQ VYVFDSVSPE KVQAVLLLLG GREIPPTMPA MPVSPNHNNR GYTGTPQKFS VPQRLASLIR FREKRKERNY
201: DKKIRYTVRK EVALRMQRNK GQFTSSKSNN DESASNATNW GMDENWTADN SGSQQQDIVC RHCGISEKST PMMRRGPEGP RTLCNACGLM WANKGILRDL
301: SRAAPLSGTI KNENKSLEAN QIVHRVAGEA DDSS

Best Arabidopsis Sequence Match ( AT1G51600.2 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.