CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62255	Soybean	nucleus	83.48	83.71
VIT_18s0001g07730.t01	Wine grape	nucleus	58.69	55.98
PGSC0003DMT400024207	Potato	nucleus	46.15	45.89
GSMUA_Achr7P01650_001	Banana	nucleus	29.34	42.21
KRH42075	Soybean	nucleus	41.6	40.78
TraesCS4B01G065300.1	Wheat	nucleus	31.05	40.52
TraesCS4A01G249400.1	Wheat	nucleus	31.05	40.37
KRH49841	Soybean	nucleus	40.17	39.72
Os03t0734900-00	Rice	nucleus	29.91	38.75
EER91071	Sorghum	nucleus	33.05	38.28
Zm00001d013331_P001	Maize	nucleus	29.91	37.77
Os03t0684000-01	Rice	nucleus	34.19	37.62
KRH62254	Soybean	nucleus	33.05	37.54
Zm00001d033523_P001	Maize	nucleus	30.77	37.5
HORVU4Hr1G010840.15	Barley	nucleus	31.91	37.46
EER90915	Sorghum	nucleus	29.34	37.32
KRH52967	Soybean	nucleus	31.62	36.51
KRH16867	Soybean	nucleus	31.91	36.48
KRH72475	Soybean	nucleus	31.91	36.13
HORVU4Hr1G004080.9	Barley	nucleus	31.34	34.16
TraesCS4D01G064200.1	Wheat	nucleus	29.63	33.55
TraesCS4A01G285900.2	Wheat	nucleus	30.48	33.54
KRH44616	Soybean	extracellular, vacuole	30.77	32.34
Solyc04g076530.2.1	Tomato	nucleus	42.73	23.73

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EMBL:ACUP02003444	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_06G098000	GO:GO:0000977
GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0045944	GO:GO:0046872	UniProt:I1K9S6	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402
InterPro:IPR013088	EnsemblPlants:KRH52968	ProteinID:KRH52968	ProteinID:KRH52968.1	PFAM:PF00320	PFAM:PF06200
PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071
PANTHER:PTHR10071:SF218	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI0002339433
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:7777861..7784830

Molecular Weight (calculated)

38084.6 Da

IEP (calculated)

4.433

GRAVY (calculated)

-0.767

Length

351 amino acids

Sequence
(BLAST)

001: MATVNPQPLQ FEDPAIPVDD DDDDDDGGDD DAMDDLEDAN VNSVNVAANA AASVNHEAVV AMPSRTSELT LSFEGEVYVF PAITPQKVQA VLLLLGGRDV
101: QARVPAVEQP FDQSNRGMGD TPKRSNLSRR IASLVRFREK RKERCFDKKI RYSVRKEVAQ RMHRKNGQFA SLKESPGSSN WDSAQSSGQD GTSHSESVRR
201: CHHCGVSENN TPAMRRGPAG PRTLCNACGL MWANKGTLRD LSKGGRNLSV EQSDLDTPID VKPTSVLEGE LPGIHDEQDS SEDPSKSNAA DGSSNHAVNP
301: SDEELPETAE HFTNVLPLGI GHSSTNENEQ EPLVELSNPS DTDIDIPGNF D

Best Arabidopsis Sequence Match ( AT1G51600.1 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.