Factsheet for HORVU4Hr1G004080.9

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G285900.2	Wheat	nucleus	79.81	80.56
Os03t0684000-01	Rice	nucleus	63.35	63.95
EER91071	Sorghum	nucleus	56.83	60.4
Zm00001d033523_P001	Maize	nucleus	52.48	58.68
GSMUA_Achr7P01650_001	Banana	nucleus	39.75	52.46
HORVU4Hr1G010840.15	Barley	nucleus	34.78	37.46
KRH62255	Soybean	nucleus	35.09	32.29
PGSC0003DMT400024207	Potato	nucleus	35.09	32.01
HORVU6Hr1G021570.1	Barley	nucleus	32.92	31.45
KRH52968	Soybean	nucleus	34.16	31.34
VIT_18s0001g07730.t01	Wine grape	nucleus	35.09	30.71
KRH42075	Soybean	nucleus	31.68	28.49
KRH49841	Soybean	nucleus	29.5	26.76
PGSC0003DMT400027729	Potato	nucleus	29.81	25.6
VIT_03s0038g00580.t01	Wine grape	cytosol	13.98	25.42
Solyc01g106040.2.1	Tomato	nucleus	29.81	25.4
HORVU7Hr1G097840.6	Barley	nucleus	34.78	23.93
Solyc04g076530.2.1	Tomato	nucleus	33.85	17.25

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:A0A287MZB3	InterPro:CCT_domain	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU4Hr1G004080
EnsemblPlants:HORVU4Hr1G004080.9	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071
PANTHER:PTHR10071:SF282	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI000B479B1B
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:9417088..9421202

Molecular Weight (calculated)

34262.9 Da

IEP (calculated)

4.377

GRAVY (calculated)

-0.619

Length

322 amino acids

Sequence
(BLAST)

001: APPPPAMSDP ASARDPDAEM RDAAAAEAAA AGDDDDGSED DAEEEEEEEE EEEEELAPAE EPAAAPEPVS AFPGSPNQLT LLFQGEVYVF ESVTPDKVQA
101: VLLLLGTGEI PPGLSAMVLP SRRENRGYED LLQRTDIPAK RVASLIRFRE KRKGRNFDKQ IRYAVRKEVA HRMQRRKGQF VGSANLEGES PSPGCDPASQ
201: GSGQDFLSRE SKCQNCGTSE KMTPAMRRGP AGPRTLCNAC GLMWANKGTL RSCSKAKVEA PMLAIEQCNA AVAQCQTGTD VKALPAPSNY DVTPSKGEAM
301: DNSVTATVAA AAIEGAPKAQ SE

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.