Factsheet for HORVU6Hr1G021570.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G010280.1
HORVU1Hr1G041480.1
HORVU1Hr1G041490.1
HORVU1Hr1G060100.2
HORVU2Hr1G005650.6
HORVU3Hr1G057280.2
HORVU5Hr1G011280.4
HORVU5Hr1G059250.1
HORVU6Hr1G021570.1
HORVU7Hr1G036210.1
HORVU7Hr1G097840.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	HORVU3Hr1G057280.2	AT1G01260.1	21798944
AT1G51600.1	HORVU0Hr1G010280.1	AT2G02560.1	21798944
AT1G51600.1	HORVU1Hr1G041480.1	AT2G02560.1	21798944
AT1G51600.1	HORVU1Hr1G041490.1	AT2G02560.1	21798944
AT1G51600.1	HORVU2Hr1G005650.6	AT2G02560.1	21798944
AT1G51600.1	HORVU5Hr1G011280.4	AT2G02560.1	21798944
AT1G51600.1	HORVU5Hr1G059250.1	AT2G02560.1	21798944
AT1G51600.1	HORVU7Hr1G036210.1	AT2G02560.1	21798944
AT1G51600.1	HORVU6Hr1G021570.1	AT3G21175.1	21798944
AT1G51600.1	HORVU7Hr1G097840.6	AT3G21175.1	21798944
AT1G51600.1	HORVU1Hr1G060100.2	AT5G58575.1	21798944
AT3G21175.1	HORVU6Hr1G021570.1	AT3G21175.1	21798944
AT3G21175.1	HORVU7Hr1G097840.6	AT3G21175.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G146800.2	Wheat	nucleus	60.24	59.36
TraesCS6A01G118800.2	Wheat	nucleus	59.64	58.94
TraesCS6D01G108700.2	Wheat	nucleus	59.64	58.77
GSMUA_Achr2P04520_001	Banana	nucleus	25.22	52.47
Os02t0148500-01	Rice	nucleus	48.66	50.0
GSMUA_Achr3P05620_001	Banana	nucleus	35.01	47.2
GSMUA_Achr9P13870_001	Banana	nucleus	37.98	42.24
CDY46552	Canola	nucleus	31.16	40.23
Bra014292.1-P	Field mustard	nucleus	30.86	40.0
VIT_09s0054g00440.t01	Wine grape	nucleus	34.72	39.13
GSMUA_Achr10P...	Banana	nucleus	37.69	39.08
CDY50073	Canola	nucleus	31.16	36.46
AT1G51600.1	Thale cress	nucleus	32.34	36.09
AT3G21175.1	Thale cress	nucleus	30.56	34.68
HORVU4Hr1G010840.15	Barley	nucleus	30.56	34.45
CDY19576	Canola	nucleus	30.56	34.45
HORVU7Hr1G097840.6	Barley	nucleus	47.48	34.19
CDY52949	Canola	nucleus	29.67	33.78
Bra031258.1-P	Field mustard	nucleus	31.45	33.02
KRH44616	Soybean	extracellular, vacuole	32.64	32.93
HORVU4Hr1G004080.9	Barley	nucleus	31.45	32.92
Bra023900.1-P	Field mustard	nucleus	30.27	28.1
CDY37312	Canola	cytosol, nucleus, plastid	29.97	27.52
CDY27538	Canola	nucleus	30.56	26.68

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:A0A287TK54	InterPro:CCT_domain	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU6Hr1G021570
EnsemblPlants:HORVU6Hr1G021570.1	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071
PANTHER:PTHR10071:SF296	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI000B464467
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:66009913..66013721

Molecular Weight (calculated)

35937.5 Da

IEP (calculated)

4.949

GRAVY (calculated)

-0.784

Length

337 amino acids

Sequence
(BLAST)

001: MSGHHDASKP YQPRRGPERP PPQQPAEDEE AAAAAMAEAE AAAGAMEQYE PHLEHEEEEE EEEEGEEEGE EEGEEGHGYA YDYVTGEAVP MDEEAAAAAA
101: HAHHGAAGPL GMEAGGAPQA PSNTLTLSFQ GEVFVFESVS AEKVQAVLLL LGGRELGPGM GAGPSSSASY SKRLNSHRMA SLMRFREKRK ERNFDKKIRY
201: SVRKEVAHRM HRHKGQFTSS KAKAEEAASV ANSDWGAVEG RPPSAPVCQH CGISSNNTPM MRRGPDGPRT LCNACGLAWA NKGMMREVKG HTPLKVVPPA
301: TDDAQNGVAE APTAEQQHLA LEAAPEAPAP AANGHDS

Best Arabidopsis Sequence Match ( AT1G51600.1 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.