Factsheet for VIT_09s0054g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g03560.t01
VIT_06s0004g06970.t01
VIT_09s0054g00440.t01
VIT_12s0035g01840.t01
VIT_15s0046g00320.t01
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	VIT_15s0046g00320.t01	AT1G01260.1	21798944
AT1G51600.1	VIT_12s0035g01840.t01	AT2G02560.1	21798944
AT1G51600.1	VIT_03s0038g03560.t01	AT2G47450.1	21798944
AT1G51600.1	VIT_09s0054g00440.t01	AT3G21175.1	21798944
AT1G51600.1	VIT_06s0004g06970.t01	AT5G58575.1	21798944
AT3G21175.1	VIT_09s0054g00440.t01	AT3G21175.1	21798944
AT3G21175.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P04520_001	Banana	nucleus	30.77	56.79
GSMUA_Achr3P05620_001	Banana	nucleus	44.48	53.2
CDY46552	Canola	nucleus	43.14	49.43
Bra014292.1-P	Field mustard	nucleus	42.47	48.85
KRH44616	Soybean	extracellular, vacuole	53.51	47.9
CDY50073	Canola	nucleus	44.82	46.53
AT3G21175.1	Thale cress	nucleus	45.82	46.13
CDY19576	Canola	nucleus	45.48	45.48
AT1G51600.1	Thale cress	nucleus	44.48	44.04
GSMUA_Achr9P13870_001	Banana	nucleus	44.48	43.89
CDY52949	Canola	nucleus	42.14	42.57
Bra031258.1-P	Field mustard	nucleus	45.15	42.06
VIT_03s0038g00480.t01	Wine grape	nucleus	40.8	40.4
Os02t0148500-01	Rice	nucleus	43.81	39.94
VIT_18s0001g07720.t01	Wine grape	nucleus	38.46	39.12
Bra023900.1-P	Field mustard	nucleus	45.82	37.74
GSMUA_Achr10P...	Banana	nucleus	40.13	36.92
CDY37312	Canola	cytosol, nucleus, plastid	44.82	36.51
EER88899	Sorghum	nucleus	41.81	35.51
CDY27538	Canola	nucleus	45.15	34.97
HORVU6Hr1G021570.1	Barley	nucleus	39.13	34.72
Zm00001d014656_P003	Maize	nucleus	41.47	34.64
TraesCS7A01G423100.2	Wheat	nucleus	45.82	34.51
TraesCS7D01G416000.2	Wheat	nucleus	44.82	34.36
Zm00001d036494_P001	Maize	nucleus	41.14	34.36
TraesCS6A01G118800.2	Wheat	nucleus	39.13	34.31
TraesCS6D01G108700.2	Wheat	nucleus	38.46	33.63
TraesCS6B01G146800.2	Wheat	nucleus	38.13	33.33
TraesCS7B01G323600.1	Wheat	nucleus	43.48	33.33
VIT_18s0001g07730.t01	Wine grape	nucleus	38.46	31.25
HORVU7Hr1G097840.6	Barley	nucleus	44.15	28.21
VIT_03s0038g00580.t01	Wine grape	cytosol	16.39	27.68

Protein Annotations

EntrezGene:100251358	wikigene:100251358	MapMan:15.5.1.3	Gene3D:3.30.50.10	ProteinID:CCB45073	ProteinID:CCB45073.1
InterPro:CCT_domain	UniProt:F6GYN7	EMBL:FN594972	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0030154	GO:GO:0043565
GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088
EntrezGene:LOC100251358	wikigene:LOC100251358	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344
PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF282	SMART:SM00401
SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI0001983FE7	ArrayExpress:VIT_09s0054g00440	EnsemblPlantsGene:VIT_09s0054g00440
EnsemblPlants:VIT_09s0054g00440.t01	unigene:Vvi.12431	RefSeq:XP_002263707	RefSeq:XP_002263707.1	RefSeq:XP_010655300.1	RefSeq:XP_010655302.1
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:-:20973834..20989595

Molecular Weight (calculated)

32679.2 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.831

Length

299 amino acids

Sequence
(BLAST)

001: MDGIHGNNAG IHRPDGQHHP IHVQHYMQEH DHGMHHMSNG GSMDEDHDEG GSGEGMEGDV QADPGNLADS RGALTVQPGG SDNQNQLTLS FQGQVYVFDS
101: VSPEKVQAVL LLLGGREVPP TMPALSIAGH NRELPGTPQR YNVPHRLASL IRFREKRKER NFDKKIRYTV RKEVALRMQR NKGQFTSSKS NHDDSASTTP
201: GWESSWGMAG NGPINQEIVC RHCGISEKST PMMRRGPEGP RTLCNACGLM WANKGTLRDL SKAAPEAGQS PSLNQTGENG NFETDQMVLG MAENVSDQA

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.