CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88899
EER99993
EES06334
EES18037
EES19274
OQU93303

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	EER99993	AT1G01260.1	21798944
AT1G51600.1	EES19274	AT1G01260.1	21798944
AT1G51600.1	EES06334	AT2G02560.1	21798944
AT1G51600.1	OQU93303	AT2G47450.1	21798944
AT1G51600.1	EER88899	AT3G21175.1	21798944
AT1G51600.1	EES18037	AT5G58575.1	21798944
AT3G21175.1	EER88899	AT3G21175.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014656_P003	Maize	nucleus	65.34	64.25
GSMUA_Achr2P04520_001	Banana	nucleus	27.56	59.88
GSMUA_Achr3P05620_001	Banana	nucleus	41.48	58.4
GSMUA_Achr9P13870_001	Banana	nucleus	42.9	49.84
TraesCS7D01G416000.2	Wheat	nucleus	53.12	47.95
TraesCS7B01G323600.1	Wheat	nucleus	51.42	46.41
TraesCS7A01G423100.2	Wheat	nucleus	51.99	46.1
CDY50073	Canola	nucleus	36.08	44.1
Bra014292.1-P	Field mustard	nucleus	32.39	43.85
CDY46552	Canola	nucleus	32.1	43.3
VIT_09s0054g00440.t01	Wine grape	nucleus	35.51	41.81
AT3G21175.1	Thale cress	nucleus	34.94	41.41
AT1G51600.1	Thale cress	nucleus	35.51	41.39
GSMUA_Achr10P...	Banana	nucleus	38.07	41.23
HORVU7Hr1G097840.6	Barley	nucleus	54.26	40.81
EER91071	Sorghum	nucleus	34.94	40.59
CDY19576	Canola	nucleus	34.09	40.13
CDY52949	Canola	nucleus	31.82	37.84
Bra031258.1-P	Field mustard	nucleus	34.38	37.69
KRH44616	Soybean	extracellular, vacuole	34.94	36.83
EER90915	Sorghum	nucleus	26.42	33.7
Bra023900.1-P	Field mustard	nucleus	33.24	32.23
CDY37312	Canola	cytosol, nucleus, plastid	33.24	31.88
OQU83708	Sorghum	cytosol	11.65	31.54
CDY27538	Canola	nucleus	33.52	30.57

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:C5Z8W2	InterPro:CCT_domain	ncoils:Coil	EnsemblPlants:EER88899
ProteinID:EER88899	ProteinID:EER88899.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0043565	GO:GO:0046654	GO:GO:0046820	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR010399
InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344
PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF296	SMART:SM00401
SMART:SM00979	EnsemblPlantsGene:SORBI_3010G249200	SUPFAM:SSF57716	unigene:Sbi.20632	InterPro:Tify_dom	UniParc:UPI0002207350
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:58885974..58890374

Molecular Weight (calculated)

37510.9 Da

IEP (calculated)

4.900

GRAVY (calculated)

-0.599

Length

352 amino acids

Sequence
(BLAST)

001: MSHHDGSKPY QPRRGPERHP QPADGMAAPP PAAVGPSVEH LVAAAAEAEA LNRFAVEPQV HEQEVGEEEE EDEEEDEMEE EEDEQEGQHG GIGGEHVPMD
101: ADAAAAAAAA AGAQMDPHSA MVPGTVPPMA TNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELSSLGG ASSSAPYSKR LNFPHRVASL MRFREKRKER
201: NFDKKIRYTV RKEVALRMQR NRGQFTSSKP KPDEIAASEM AAVDGSPNWA LVEGRPPSAA ECHHCGTNAT ATPMMRRGPD GPRTLCNACG LMWANKGLLR
301: DLSKSPVPLQ VMQSAPLLDG GQNGNVMSAP GSELENAAAA MTNGHESSSS GV

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.