Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G323600.1 | Wheat | nucleus | 89.49 | 89.49 |
| TraesCS7A01G423100.2 | Wheat | nucleus | 81.28 | 79.85 |
| HORVU7Hr1G097840.6 | Barley | nucleus | 89.23 | 74.36 |
| GSMUA_Achr2P04520_001 | Banana | nucleus | 25.64 | 61.73 |
| GSMUA_Achr3P05620_001 | Banana | nucleus | 37.69 | 58.8 |
| EER88899 | Sorghum | nucleus | 47.95 | 53.12 |
| GSMUA_Achr9P13870_001 | Banana | nucleus | 40.77 | 52.48 |
| Zm00001d014656_P003 | Maize | nucleus | 47.18 | 51.4 |
| Zm00001d036494_P001 | Maize | nucleus | 46.41 | 50.56 |
| Bra014292.1-P | Field mustard | nucleus | 30.0 | 45.0 |
| VIT_09s0054g00440.t01 | Wine grape | nucleus | 34.36 | 44.82 |
| CDY46552 | Canola | nucleus | 29.74 | 44.44 |
| GSMUA_Achr10P... | Banana | nucleus | 35.38 | 42.46 |
| CDY19576 | Canola | nucleus | 32.31 | 42.14 |
| AT1G51600.1 | Thale cress | nucleus | 32.31 | 41.72 |
| AT3G21175.1 | Thale cress | nucleus | 31.54 | 41.41 |
| CDY50073 | Canola | nucleus | 30.51 | 41.32 |
| TraesCS6D01G108700.2 | Wheat | nucleus | 35.38 | 40.35 |
| Bra031258.1-P | Field mustard | nucleus | 32.56 | 39.56 |
| KRH44616 | Soybean | extracellular, vacuole | 33.08 | 38.62 |
| CDY52949 | Canola | nucleus | 28.72 | 37.84 |
| Bra023900.1-P | Field mustard | nucleus | 31.54 | 33.88 |
| CDY37312 | Canola | cytosol, nucleus, plastid | 31.54 | 33.52 |
| CDY27538 | Canola | nucleus | 31.79 | 32.12 |
| TraesCS4D01G064200.1 | Wheat | nucleus | 25.38 | 31.94 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | InterPro:CCT_domain | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000679 |
| InterPro:IPR010399 | InterPro:IPR010402 | InterPro:IPR013088 | PFAM:PF00320 | PFAM:PF06200 | PFAM:PF06203 |
| ScanProsite:PS00344 | PFscan:PS50114 | PFscan:PS51017 | PFscan:PS51320 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF296 |
| SMART:SM00401 | SMART:SM00979 | SUPFAM:SSF57716 | InterPro:Tify_dom | EnsemblPlantsGene:TraesCS7D01G416000 | EnsemblPlants:TraesCS7D01G416000.2 |
| InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | TIGR:cd00202 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7D:+:535306114..535312115
Molecular Weight (calculated)
41305.5 Da
IEP (calculated)
4.583
GRAVY (calculated)
-0.770
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQHDGKPYQ PRRGPERPPQ PAEDPPAPAA APAAADAVID HLAAVAAEAE ALNASIAAVA AEAEAMNAYE HAQEQEMEEE EEEEEEEEEE EMEEEEDEGE
101: GDGQHEHGQH GGNGESVPMD AEAVAQAAAA AAAGAPLDPH GAMVSAIVPP ATGNQLTLSF QGEVYVFDSV SPDKVQAVLL LLGGRELNPG MGAGASSSTP
201: YSKRLNFPHR VASLMRFREK RKERNFDKKI RYTVRKEVAL RMQRNRGQFT SSKPKPDDGT SELATADGSP NWGSVEGRPP SAASCHHCGT NAHNTPMMRR
301: GPEGPRTLCN ACGLMWANKG MLRDLSKSTP PSLQMVSTGP NDSQNGNTLS QQNGSTLSQQ NGNAAIVPFA EQQNPAPATD ANGHGHGSST
101: GDGQHEHGQH GGNGESVPMD AEAVAQAAAA AAAGAPLDPH GAMVSAIVPP ATGNQLTLSF QGEVYVFDSV SPDKVQAVLL LLGGRELNPG MGAGASSSTP
201: YSKRLNFPHR VASLMRFREK RKERNFDKKI RYTVRKEVAL RMQRNRGQFT SSKPKPDDGT SELATADGSP NWGSVEGRPP SAASCHHCGT NAHNTPMMRR
301: GPEGPRTLCN ACGLMWANKG MLRDLSKSTP PSLQMVSTGP NDSQNGNTLS QQNGSTLSQQ NGNAAIVPFA EQQNPAPATD ANGHGHGSST
001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ
Arabidopsis Description
GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.