Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G498700.1 | Wheat | mitochondrion | 97.7 | 97.95 |
| TraesCS4B01G326700.1 | Wheat | plastid | 97.96 | 97.71 |
| Os03t0131900-01 | Rice | plastid | 80.61 | 81.44 |
| OQU93303 | Sorghum | mitochondrion, plastid | 76.28 | 78.48 |
| Zm00001d027518_P001 | Maize | plastid | 73.47 | 75.39 |
| AT2G47450.1 | Thale cress | plastid | 47.7 | 50.13 |
| KRH29099 | Soybean | plastid | 47.96 | 49.21 |
| Solyc02g087400.1.1 | Tomato | cytosol, mitochondrion | 46.17 | 49.18 |
| PGSC0003DMT400003274 | Potato | plastid | 45.92 | 48.39 |
| VIT_03s0038g03560.t01 | Wine grape | plastid | 45.92 | 48.26 |
| CDX77337 | Canola | plastid | 46.43 | 47.89 |
| Bra014106.1-P | Field mustard | plastid | 46.17 | 47.63 |
| CDY70592 | Canola | plastid | 45.92 | 47.37 |
| KRG92072 | Soybean | cytosol | 13.01 | 46.79 |
Protein Annotations
| Gene3D:1.25.40.20 | Gene3D:2.40.50.40 | MapMan:23.1.7.3.1 | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf |
| InterPro:CPSRP43 | InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009416 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 |
| GO:GO:0045038 | GO:GO:0080085 | InterPro:IPR000953 | InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 |
| PFAM:PF00385 | PFAM:PF13857 | PFscan:PS50013 | PFscan:PS50088 | PFscan:PS50297 | PANTHER:PTHR24128 |
| PANTHER:PTHR24128:SF11 | SMART:SM00248 | SMART:SM00298 | SUPFAM:SSF48403 | SUPFAM:SSF54160 | EnsemblPlantsGene:TraesCS4D01G323400 |
| EnsemblPlants:TraesCS4D01G323400.1 | TIGR:cd00024 | TIGR:cd00204 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4D:-:484725222..484726572
Molecular Weight (calculated)
42330.9 Da
IEP (calculated)
4.386
GRAVY (calculated)
-0.523
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAVLRHPSL SRLKAPNPAA HRTQHLSITV PRRPRVPKRR LAAAAALFQD QTNPRTAAAS KGGDEEDEEG YGEVDRIVSS RTVKNAVFAE DGSATTVTAT
101: EYLVEWKDGH EPTWIPAEAI AADVVAEYET PWWDAAKKAD ADALGALLAD EALRRDPDAE DAQGRTAMHF AAGLGSEECL RLLAEAGADV GHAERAGGGL
201: TPLHIAAGYG RATGVRALLE LGADAEGPDG KGRTPLELVQ EVLAATPKGV PAAFERRQAL EAAAKELEKA VYEWGEVEKV VDGRGEGKWR EYLVEWRDGG
301: DREWVKAPWV AEDLVKDFEA GLEYGVAEAV VDRRQAADGD GDGRWEYLVK WVDTEEATWE PAENVDAELV QEFERQQPGN GGAAPPAETF AG
101: EYLVEWKDGH EPTWIPAEAI AADVVAEYET PWWDAAKKAD ADALGALLAD EALRRDPDAE DAQGRTAMHF AAGLGSEECL RLLAEAGADV GHAERAGGGL
201: TPLHIAAGYG RATGVRALLE LGADAEGPDG KGRTPLELVQ EVLAATPKGV PAAFERRQAL EAAAKELEKA VYEWGEVEKV VDGRGEGKWR EYLVEWRDGG
301: DREWVKAPWV AEDLVKDFEA GLEYGVAEAV VDRRQAADGD GDGRWEYLVK WVDTEEATWE PAENVDAELV QEFERQQPGN GGAAPPAETF AG
001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE
Arabidopsis Description
CAOSignal recognition particle 43 kDa protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22265]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.