Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77337 | Canola | plastid | 73.99 | 72.63 |
| Bra014106.1-P | Field mustard | plastid | 73.73 | 72.37 |
| CDY70592 | Canola | plastid | 73.46 | 72.11 |
| KRG92072 | Soybean | cytosol | 18.77 | 64.22 |
| VIT_03s0038g03560.t01 | Wine grape | plastid | 56.57 | 56.57 |
| Solyc02g087400.1.1 | Tomato | cytosol, mitochondrion | 55.76 | 56.52 |
| PGSC0003DMT400003274 | Potato | plastid | 54.96 | 55.11 |
| KRH29099 | Soybean | plastid | 56.03 | 54.71 |
| OQU93303 | Sorghum | mitochondrion, plastid | 50.13 | 49.08 |
| Zm00001d027518_P001 | Maize | plastid | 49.06 | 47.91 |
| TraesCS5A01G498700.1 | Wheat | mitochondrion | 50.13 | 47.83 |
| TraesCS4D01G323400.1 | Wheat | plastid | 50.13 | 47.7 |
| TraesCS4B01G326700.1 | Wheat | plastid | 50.13 | 47.58 |
| Os03t0131900-01 | Rice | plastid | 48.79 | 46.91 |
Protein Annotations
| Gene3D:1.25.40.20 | PDB:1X32 | PDB:1X3P | PDB:1X3Q | Gene3D:2.40.50.40 | MapMan:23.1.7.3.1 |
| PDB:2HUG | PDB:2N88 | PDB:3DEO | PDB:3DEP | PDB:3UI2 | PDB:5E4W |
| PDB:5E4X | EntrezGene:819358 | ProteinID:AAC62865.2 | ProteinID:AAD01509.1 | ProteinID:AEC10842.1 | ArrayExpress:AT2G47450 |
| EnsemblPlantsGene:AT2G47450 | RefSeq:AT2G47450 | TAIR:AT2G47450 | RefSeq:AT2G47450-TAIR-G | EnsemblPlants:AT2G47450.1 | TAIR:AT2G47450.1 |
| EMBL:AY050442 | EMBL:AY054584 | EMBL:AY057532 | EMBL:AY133540 | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom |
| InterPro:Ankyrin_rpt-contain_sf | Unigene:At.19748 | EMBL:BT002191 | Symbol:CAO | InterPro:CPSRP43 | InterPro:Chromo-like_dom_sf |
| InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005786 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009416 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009570 |
| GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009644 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0019904 | GO:GO:0030529 | GO:GO:0030674 | GO:GO:0032991 | GO:GO:0042802 |
| GO:GO:0043234 | GO:GO:0045038 | GO:GO:0046872 | GO:GO:0070208 | GO:GO:0080085 | GO:GO:0097718 |
| InterPro:IPR000953 | InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 | RefSeq:NP_566101.1 | UniProt:O22265 |
| PFAM:PF00385 | PFAM:PF12796 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50013 | PFscan:PS50088 | PFscan:PS50297 | PANTHER:PTHR24128 | PANTHER:PTHR24128:SF11 |
| SMART:SM00248 | SMART:SM00298 | SUPFAM:SSF48403 | SUPFAM:SSF54160 | UniParc:UPI00000A1F27 | SEG:seg |
Description
CAOSignal recognition particle 43 kDa protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22265]
Coordinates
chr2:+:19472573..19474387
Molecular Weight (calculated)
41281.3 Da
IEP (calculated)
4.237
GRAVY (calculated)
-0.375
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.