Factsheet for Zm00001d027518_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000349_P001
Zm00001d000350_P001
Zm00001d003333_P005
Zm00001d008625_P001
Zm00001d012652_P003
Zm00001d023431_P002
Zm00001d023606_P005
Zm00001d025668_P005
Zm00001d027518_P001
Zm00001d038661_P001
Zm00001d039852_P001
Zm00001d041839_P001
Zm00001d042044_P001
Zm00001d043303_P001
Zm00001d052556_P001
Zm00001d053989_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47450.1	Zm00001d012652_P003	AT1G15310.1	20828566
AT2G47450.1	Zm00001d038661_P001	AT1G15310.1	20828566
AT2G47450.1	Zm00001d043303_P001	AT1G15310.1	20828566
AT2G47450.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT2G47450.1	Zm00001d041839_P001	AT1G34430.1	21798944
AT2G47450.1	Zm00001d000349_P001	AT2G18710.1	14517205
AT2G47450.1	Zm00001d000350_P001	AT2G18710.1	14517205
AT2G47450.1	Zm00001d008625_P001	AT2G28800.1	14517205
AT2G47450.1	Zm00001d039852_P001	AT2G28800.1	14517205
AT2G47450.1	Zm00001d008625_P001	AT2G28800.1	20828566
AT2G47450.1	Zm00001d039852_P001	AT2G28800.1	20828566
AT2G47450.1	Zm00001d042044_P001	AT2G45770.1	14517205
AT2G47450.1	Zm00001d042044_P001	AT2G45770.1	20828566
AT2G47450.1	Zm00001d027518_P001	AT2G47450.1	10480939
AT2G47450.1	Zm00001d027518_P001	AT2G47450.1	11306572
AT2G47450.1	Zm00001d053989_P003	AT4G10930.1	21798944
AT2G47450.1	Zm00001d023431_P002	AT5G03940.1	10480939
AT2G47450.1	Zm00001d052556_P001	AT5G03940.1	10480939
AT2G47450.1	Zm00001d023431_P002	AT5G03940.1	11306572
AT2G47450.1	Zm00001d052556_P001	AT5G03940.1	11306572
AT2G47450.1	Zm00001d023431_P002	AT5G03940.1	14517205
AT2G47450.1	Zm00001d052556_P001	AT5G03940.1	14517205
AT2G47450.1	Zm00001d023431_P002	AT5G03940.1	15292240
AT2G47450.1	Zm00001d052556_P001	AT5G03940.1	15292240
AT2G47450.1	Zm00001d023431_P002	AT5G03940.1	15632183
AT2G47450.1	Zm00001d052556_P001	AT5G03940.1	15632183
AT2G47450.1	Zm00001d023431_P002	AT5G03940.1	16678173
AT2G47450.1	Zm00001d052556_P001	AT5G03940.1	16678173
AT2G47450.1	Zm00001d003333_P005	AT5G56250.1	21798944
AT2G47450.1	Zm00001d025668_P005	AT5G56250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93303	Sorghum	mitochondrion, plastid	92.67	92.91
Os03t0131900-01	Rice	plastid	80.37	79.12
TraesCS5A01G498700.1	Wheat	mitochondrion	75.39	73.66
TraesCS4D01G323400.1	Wheat	plastid	75.39	73.47
TraesCS4B01G326700.1	Wheat	plastid	74.87	72.77
KRG92072	Soybean	cytosol	14.4	50.46
VIT_03s0038g03560.t01	Wine grape	plastid	48.69	49.87
KRH29099	Soybean	plastid	49.21	49.21
CDX77337	Canola	plastid	48.95	49.21
Solyc02g087400.1.1	Tomato	cytosol, mitochondrion	47.38	49.18
AT2G47450.1	Thale cress	plastid	47.91	49.06
Bra014106.1-P	Field mustard	plastid	48.69	48.95
CDY70592	Canola	plastid	48.43	48.68
PGSC0003DMT400003274	Potato	plastid	47.38	48.66

Protein Annotations

Gene3D:1.25.40.20	Gene3D:2.40.50.40	MapMan:23.1.7.3.1	UniProt:A0A1D6JMT9	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:CPSRP43	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009416	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009644	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0019904	GO:GO:0030674	GO:GO:0032991	GO:GO:0042802	GO:GO:0043234
GO:GO:0045038	GO:GO:0070208	GO:GO:0080085	GO:GO:0097718	InterPro:IPR000953	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	ProteinID:ONL93361.1	PFAM:PF00385	PFAM:PF13857	PFscan:PS50013
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF11	SMART:SM00248	SMART:SM00298
SUPFAM:SSF48403	SUPFAM:SSF54160	UniParc:UPI0008456F11	EnsemblPlantsGene:Zm00001d027518	EnsemblPlants:Zm00001d027518_P001	EnsemblPlants:Zm00001d027518_T001
SEG:seg	:	:	:	:	:

Description

Signal recognition particle 43 kDa protein chloroplastic

Coordinates

chr1:-:7311454..7312602

Molecular Weight (calculated)

41387.8 Da

IEP (calculated)

4.288

GRAVY (calculated)

-0.492

Length

382 amino acids

Sequence
(BLAST)

001: MEAVLRHPSL SRTRPPNLNP PTTPSPSLHA PSLLRLRARR LIAAAVFQDQ KPKEPASKGG DDEEEAYGEV DRIVSSRTVS SPVFAEDGSA TAAVATEFLV
101: EWKDGHEPSW VPAEAIAADV VAEYETPWWT AAKKADSEAL AALLADETLR RDPDAEDAQG RTAAHFAAGL GSEECLRALG AAGADVGRRE RAGGGLTPLH
201: MAVGYGRAGA VRALLELGAD PEAPDGQGRT PLELVQEVLA RAPKGNPATF QLRQGLEAAQ KELEKAVYEW AEVEKVIDGR GEGKWREYLV EWRDGGEREW
301: VKAAWVAEDL VSDFEAGLEY AVAEAVLDKR QAATATAEEE DSWEYLVKWV DIEEATWEPA ENVDTELVQK FEQQQSGSAG GD

Best Arabidopsis Sequence Match ( AT2G47450.1 )
(BLAST)

001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE

Arabidopsis Description

CAOSignal recognition particle 43 kDa protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22265]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.