Factsheet for Zm00001d000350_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000349_P001
Zm00001d000350_P001
Zm00001d008625_P001
Zm00001d039852_P001
Zm00001d045144_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	Zm00001d000349_P001	AT2G18710.1	15988575
AT2G18710.1	Zm00001d000350_P001	AT2G18710.1	15988575
AT2G18710.1	Zm00001d008625_P001	AT2G28800.1	12217076
AT2G18710.1	Zm00001d039852_P001	AT2G28800.1	12217076
AT2G18710.1	Zm00001d008625_P001	AT2G28800.1	15988575
AT2G18710.1	Zm00001d039852_P001	AT2G28800.1	15988575
AT2G18710.1	Zm00001d045144_P001	AT4G14870.1	10207046
AT2G18710.1	Zm00001d045144_P001	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14786	Sorghum	plastid	89.58	62.32
Os08t0254500-02	Rice	plastid	79.69	55.04
TraesCS5B01G157500.1	Wheat	plastid	75.0	52.55
TraesCS5D01G164800.1	Wheat	plastid	74.48	52.19
HORVU5Hr1G049980.4	Barley	plastid	74.48	48.64
VIT_11s0065g00940.t01	Wine grape	plastid	67.71	47.62
TraesCS5A01G159800.1	Wheat	cytosol	74.22	47.5
GSMUA_Achr4P12710_001	Banana	plastid	67.97	46.86
AT2G18710.1	Thale cress	plastid	66.93	46.64
Bra038815.1-P	Field mustard	plastid	66.41	46.28
CDY49314	Canola	plastid	66.41	46.28
CDY13013	Canola	plastid	66.15	46.18
KRH54991	Soybean	plastid	64.32	45.74
Solyc07g006520.2.1	Tomato	plastid	63.8	45.71
PGSC0003DMT400070672	Potato	plastid	63.54	45.35
Zm00001d038128_P004	Maize	plastid	21.35	15.65
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	2.34	4.27
KRH63143	Soybean	endoplasmic reticulum	0.26	0.56

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.5.2	UniProt:A0A1X7YI93	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	InterPro:IPR023201	PFAM:PF00344
PIRSF:PIRSF004557	PRINTS:PR00303	ScanProsite:PS00755	ScanProsite:PS00756	PANTHER:PTHR10906	PANTHER:PTHR10906:SF9
SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha	InterPro:SecY_CS	InterPro:SecY_dom_sf	TMHMM:TMhelix	UniParc:UPI000842B4B1
EnsemblPlantsGene:Zm00001d000350	EnsemblPlants:Zm00001d000350_P001	EnsemblPlants:Zm00001d000350_T001	SEG:seg	:	:

Description

chloroplast SecY-1Preprotein translocase subunit SCY1 chloroplastic

Coordinates

chrB73V4_ctg35:-:44795..47751

Molecular Weight (calculated)

41227.1 Da

IEP (calculated)

10.076

GRAVY (calculated)

0.197

Length

384 amino acids

Sequence
(BLAST)

001: MVTATTTPPQ CWRGLPALAR APPPLSSPLR PRAVAAAAPI YPLRRRIAIT TTRGRRGTLD CSPRCTLETA GPGFDPLGLY EEGSNSLSRS PLSTFFGIMA
101: PVFGSSSGGG ASREKASGRG AAAAIEDSSI DIGDFFKGPL PGKFLKLLGF LALSRLGVYI PLGGVNREAF AGNLDQNSLL GTLDSFSGGG IGRLGICSLG
201: IVPFINAQIV FQLLAQLYPK LQDLQRKEGE AGRKKVLQYT RYASVGFAIV QAIGQVLYLR PYVNDFSTEW VLTSVTLLTL GSVFTTFIGE RISDLKLGNG
301: TSLLIFTSII SYLPASFGRT VAQAFQDGNY VGLLTIILSF LLLVLGIVYV QEAERKIPLN YASRYSSRTG ELQRSAYLPF KVSY

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.