CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24811
KRH29812
KRH54991
KRH63143
KRH77853

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	KRH54991	AT2G18710.1	15988575
AT2G18710.1	KRH63143	AT2G18710.1	15988575
AT2G18710.1	KRH24811	AT2G28800.1	12217076
AT2G18710.1	KRH29812	AT2G28800.1	12217076
AT2G18710.1	KRH24811	AT2G28800.1	15988575
AT2G18710.1	KRH29812	AT2G28800.1	15988575
AT2G18710.1	KRH77853	AT4G14870.1	10207046
AT2G18710.1	KRH77853	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63143	Soybean	endoplasmic reticulum	30.74	92.74
PGSC0003DMT400070672	Potato	plastid	76.85	77.14
AT2G18710.1	Thale cress	plastid	78.52	76.95
Solyc07g006520.2.1	Tomato	plastid	76.3	76.87
VIT_11s0065g00940.t01	Wine grape	plastid	77.59	76.74
CDY49314	Canola	plastid	77.78	76.22
Bra038815.1-P	Field mustard	plastid	77.59	76.04
CDY13013	Canola	plastid	77.41	76.0
GSMUA_Achr4P12710_001	Banana	plastid	76.48	74.15
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	28.89	73.93
EES14786	Sorghum	plastid	73.15	71.56
Os08t0254500-02	Rice	plastid	73.33	71.22
TraesCS5B01G157500.1	Wheat	plastid	70.93	69.89
TraesCS5D01G164800.1	Wheat	plastid	70.74	69.71
HORVU5Hr1G049980.4	Barley	plastid	70.74	64.97
Zm00001d000350_P001	Maize	plastid	45.74	64.32
TraesCS5A01G159800.1	Wheat	cytosol	70.93	63.83
KRH38249	Soybean	cytosol	5.74	26.96
KRH67197	Soybean	plastid	22.41	21.45
KRG95514	Soybean	plastid	10.93	16.34

Protein Annotations

Gene3D:1.10.3370.10	EntrezGene:100810430	MapMan:23.1.5.2	EMBL:ACUP02003675	EnsemblPlantsGene:GLYMA_06G223700	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	UniProt:I1KDG6
InterPro:IPR023201	EnsemblPlants:KRH54991	ProteinID:KRH54991	ProteinID:KRH54991.1	HAMAP:MF_01465	PFAM:PF00344
PRINTS:PR00303	ScanProsite:PS00755	ScanProsite:PS00756	PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	SUPFAM:SSF103491
InterPro:SecY	InterPro:SecY/SEC61-alpha	InterPro:SecY_CS	InterPro:SecY_dom_sf	TIGRFAMs:TIGR00967	TMHMM:TMhelix
UniParc:UPI0002339A4E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:29679742..29683965

Molecular Weight (calculated)

58784.1 Da

IEP (calculated)

9.864

GRAVY (calculated)

0.243

Length

540 amino acids

Sequence
(BLAST)

001: MLITVREASS CSSSPLSFWL NRFNAKPSKT LKTTSICQAS FSVQRRPTHS WNTRHLSTSS ELANFDPLGI NSDLSSGLNS TWKNLVCSIT QTFESTSSAE
101: KGKPNSSQGV AAAIEDSSID FGDFFKGPLP GKFLKLLGFL ALSRLGVYIP LGGVNREAFV GNLDQNSLLS TLDSFSGGGI GRLGVCSLGI VPFINAQIVF
201: QLLAQVYPKL QDLQKREGEA GRKKVLQYTR YASVGFAIVQ AIGQVLFLRP YVNDFSTEWV ISSVILLTLG SVFTMYIGER ITDLKLGNGT SLLIFTNIIS
301: YLPASFGRTI AQAFNDANYI GLGTIVLSFF LLVVGIVYVQ EAERKIPLNY ASRFTSRSTG LEKSAYLPFK VNSSGVMPII FSTSSLALPG TLARFTGLTA
401: LKKAAVALNP GGSFYLPFNI LLIAFFNYYY TFLQLDPDDV SEQLKRQGAS IPLVRPGRTT ATFIKTVLSR ISVLGSTFLA ILAAGPAVVE QITHLTAFRG
501: FAGTSILILV GCATDTARKV QAEIISQKYK NIEFYDFDKY

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.