CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38249	Soybean	cytosol	18.97	93.04
KRG95514	Soybean	plastid	54.43	85.04
GSMUA_Achr3P07370_001	Banana	plasma membrane	65.25	72.73
VIT_07s0104g00040.t01	Wine grape	cytosol	74.82	68.84
Solyc09g065120.2.1	Tomato	cytosol, plastid	68.44	67.01
TraesCS1A01G248600.1	Wheat	plastid	60.99	65.03
HORVU1Hr1G062340.4	Barley	plastid	60.99	64.78
TraesCS1B01G259300.2	Wheat	plastid	60.82	64.6
Zm00001d038128_P004	Maize	plastid	59.75	64.31
TraesCS1D01G248100.2	Wheat	plastid	60.46	64.22
Os05t0397700-01	Rice	plastid	60.82	63.28
KXG21937	Sorghum	plastid	59.75	62.64
KRH63143	Soybean	endoplasmic reticulum	7.62	24.02
KRH54991	Soybean	plastid	21.45	22.41

Protein Annotations

Gene3D:1.10.3370.10	EntrezGene:100803256	MapMan:23.1.4.2	EMBL:ACUP02002043	EMBL:ACUP02002044	EnsemblPlantsGene:GLYMA_03G153100
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021
UniProt:I1JNT8	InterPro:IPR023201	EnsemblPlants:KRH67197	ProteinID:KRH67197	ProteinID:KRH67197.1	PFAM:PF00344
PRINTS:PR00303	PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf
TMHMM:TMhelix	UniParc:UPI00023C20F4	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:36794904..36805152

Molecular Weight (calculated)

63029.1 Da

IEP (calculated)

9.669

GRAVY (calculated)

0.281

Length

564 amino acids

Sequence
(BLAST)

001: MEATRFSPNH FYPHRFQTKP NALRERRYVK CINGIGARVS LFTNPAFNAS NRSLFPKLNR TLSVSFSDRL RGDYARVDEE VVPATRGDGG EAVISSSSPS
101: ANSSGTLQLK PLMFRNRFLN FARLGSVING AAESFFKSEI RRRLFVTAML IVISRVGYFI PLPGFDRRLI PEDYLSFVAG SSVDELGDFT AELKLSIFQL
201: GISPQIIASI IMQVLCHVVP SLVKLRKEGL DGHEKIKSYI WWMSFGFAIL EALIVACYSL PYSIYAATYR VKHVMVTSIL LVCGAMTITW ICDTISESGF
301: GQGSSLIICV GILTGYMETL YKMLTQLSVS AVSWWPYVLA VLGIFTIVTM WAVVVTEGCR KVKLQYYGFK LASAAREHSP ITEVEPYIPF NINPAGMQPV
401: LTTSYLLAFP SILASLLRSP FWEHAKEMLN PETSVGAEPW VYYSIYAFFV FLFNIFDIAN MPKEIADYLN KMGARIPNIK PGKATIEYLS KVQASTRFWG
501: GLLLSVLATT SSVLDHYLRR VNAGFAIGFT SVLIIVGSII ELRRSYQAYN VMPSLSNALR RYGV

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.