Factsheet for TraesCS1A01G248600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G248100.2	Wheat	plastid	94.33	93.97
HORVU1Hr1G062340.4	Barley	plastid	93.57	93.22
TraesCS1B01G259300.2	Wheat	plastid	90.55	90.21
Zm00001d038128_P004	Maize	plastid	81.66	82.44
KXG21937	Sorghum	plastid	81.66	80.3
Os05t0397700-01	Rice	plastid	81.47	79.52
KRH38249	Soybean	cytosol	15.88	73.04
GSMUA_Achr3P07370_001	Banana	plasma membrane	66.54	69.57
KRH67197	Soybean	plastid	65.03	60.99
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	12.67	60.36
CDX84779	Canola	plastid	64.65	60.32
Bra022846.1-P	Field mustard	plastid	62.95	59.78
CDY23936	Canola	plastid	64.46	59.41
AT2G31530.1	Thale cress	plastid	64.46	59.3
VIT_07s0104g00040.t01	Wine grape	cytosol	65.6	56.61
Solyc09g065120.2.1	Tomato	cytosol, plastid	61.44	56.42
KRG95514	Soybean	plastid	34.4	50.42
CDX84169	Canola	plasma membrane	17.96	43.18
CDY62161	Canola	golgi, plastid, vacuole	11.15	42.14
CDX72502	Canola	cytosol, nucleus, plasma membrane	13.04	38.55
CDX92207	Canola	cytosol	11.34	26.67
Bra029080.1-P	Field mustard	mitochondrion	11.15	25.99
CDY68266	Canola	cytosol, nucleus	11.91	25.4
Bra039109.1-P	Field mustard	nucleus	12.85	23.78
CDY51931	Canola	cytosol, golgi, nucleus	10.96	22.57
TraesCS5A01G159800.1	Wheat	cytosol	22.31	19.67

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.4.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009526	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987
GO:GO:0010027	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0072598	InterPro:IPR023201
PFAM:PF00344	PRINTS:PR00303	PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha
InterPro:SecY_dom_sf	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1A01G248600	EnsemblPlants:TraesCS1A01G248600.1	SEG:seg	:

Description

No Description!

Coordinates

chr1A:-:440784091..440796646

Molecular Weight (calculated)

58365.9 Da

IEP (calculated)

9.791

GRAVY (calculated)

0.323

Length

529 amino acids

Sequence
(BLAST)

001: MSSSLALSLP LPPRCALPLP PPHLAPKHPS LRANQCHLLV RTLPPPRRLL LAPRASSYAA SPAEPAREGG AGGKKAPGFR NRFLDLARLG AVAEGAAEAF
101: FRSEIRRRLA VTAVLIVLSR VGYFVPLPGF DRRLIPDSYL SFAPLPADDL VDFASELKLS FFQLGISHQI SASIVMQVLC HVLPSLEKIR KEGLDGHEKI
201: KSYIWWLSLG FAIVAACTVS CYSLQYSIYA ASYRVKHVIL TSFLLVLGAM STTWICDTIT ESGFGHGSSL IICVGILTGY TNTLHKMLTQ FSGNVCTSWP
301: YILGVAGIFM MVTMGAVLVT EGCRKIKLQY YGFKLASIAG NENSPVTEVE PYIPFNINPT GMQPLLTTSY LLAFPSIMAS IFRSPFWENL KEILNPMTSV
401: GGSPWIYYLT YAFFVFVFNI FDIANLPKEI SDYLNKMSAR VPKIKPGRAT VDYLTKIQTS TRFWGGLLLS LLATSSLLLD RYLRQINEGF SIGFTSVLII
501: VGSIIELRRS YQAYNVMPAL SKVLKRYGA

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.