CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62161	Canola	golgi, plastid, vacuole	50.28	64.29
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.61	47.75
CDY68266	Canola	cytosol, nucleus	45.81	33.06
CDX92207	Canola	cytosol	41.34	32.89
CDY51931	Canola	cytosol, golgi, nucleus	38.55	26.85
CDX84169	Canola	plasma membrane	24.02	19.55
CDX84779	Canola	plastid	53.07	16.75
CDY23936	Canola	plastid	51.4	16.03
AT2G31530.1	Thale cress	plastid	50.28	15.65
GSMUA_Achr3P07370_001	Banana	plasma membrane	44.13	15.61
Zm00001d038128_P004	Maize	plastid	39.11	13.36
TraesCS1A01G248600.1	Wheat	plastid	38.55	13.04
KXG21937	Sorghum	plastid	39.11	13.01
HORVU1Hr1G062340.4	Barley	plastid	38.55	12.99
TraesCS1B01G259300.2	Wheat	plastid	38.55	12.99
TraesCS1D01G248100.2	Wheat	plastid	38.55	12.99
Os05t0397700-01	Rice	plastid	38.55	12.73
VIT_07s0104g00040.t01	Wine grape	cytosol	43.58	12.72
Solyc09g065120.2.1	Tomato	cytosol, plastid	37.43	11.63
CDY13013	Canola	plastid	22.35	7.27
CDY49314	Canola	plastid	21.79	7.08
KRH38249	Soybean	cytosol	1.12	1.74

Protein Annotations

Gene3D:1.10.3370.10	Gene3D:2.130.10.10	MapMan:35.1	GO:A0A078C6I4	EnsemblPlants:CDX72502	ProteinID:CDX72502
ProteinID:CDX72502.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00100033001	InterPro:IPR015943	InterPro:IPR023201
PFAM:PF00344	PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf
TMHMM:TMhelix	UniParc:UPI0004EF49FB	InterPro:WD40/YVTN_repeat-like_dom_sf	:	:	:

Description

BnaC07g45240D

Coordinates

chrLK031796:+:1604760..1605893

Molecular Weight (calculated)

20027.9 Da

IEP (calculated)

4.185

GRAVY (calculated)

0.202

Length

179 amino acids

Sequence
(BLAST)

001: MILGTHTSEN EPNYLMIAQV QLPLDDTESE ARQYDDERSE FGGFGCATGK YLLIWDLRSP SASKPIQCVV AHSMEVLCNE LNFKSREGSP ITEVEPYIPF
101: NINPAGMQPV LTTTYLLAFP SILASIVGSP FLLHVKDILN PESTVGAPPW VYYSVYAFFV FLFNIFDIVS VTYSFFFSA

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.