Factsheet for GSMUA_Achr3P07370_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, peroxisome, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38249	Soybean	cytosol	17.79	78.26
TraesCS1A01G248600.1	Wheat	plastid	69.57	66.54
TraesCS1B01G259300.2	Wheat	plastid	69.57	66.29
HORVU1Hr1G062340.4	Barley	plastid	69.57	66.29
TraesCS1D01G248100.2	Wheat	plastid	69.37	66.1
KRH67197	Soybean	plastid	72.73	65.25
Zm00001d038128_P004	Maize	plastid	67.19	64.89
Os05t0397700-01	Rice	plastid	68.77	64.21
KXG21937	Sorghum	plastid	67.59	63.57
CDX84779	Canola	plastid	67.98	60.67
CDY23936	Canola	plastid	68.58	60.45
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	13.24	60.36
Bra022846.1-P	Field mustard	plastid	66.21	60.14
VIT_07s0104g00040.t01	Wine grape	cytosol	72.73	60.03
AT2G31530.1	Thale cress	plastid	68.18	60.0
Solyc09g065120.2.1	Tomato	cytosol, plastid	67.79	59.55
KRG95514	Soybean	plastid	38.54	54.02
CDY62161	Canola	golgi, plastid, vacuole	13.04	47.14
CDX84169	Canola	plasma membrane	19.96	45.91
CDX72502	Canola	cytosol, nucleus, plasma membrane	15.61	44.13
CDX92207	Canola	cytosol	12.45	28.0
CDY68266	Canola	cytosol, nucleus	13.44	27.42
Bra029080.1-P	Field mustard	mitochondrion	12.25	27.31
CDY51931	Canola	cytosol, golgi, nucleus	12.65	24.9
Bra039109.1-P	Field mustard	nucleus	13.83	24.48
GSMUA_Achr4P12710_001	Banana	plastid	25.1	22.8

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.4.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009526	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987
GO:GO:0010027	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0072598
EnsemblPlantsGene:GSMUA_Achr3G07370_001	EnsemblPlants:GSMUA_Achr3P07370_001	EnsemblPlants:GSMUA_Achr3T07370_001	InterPro:IPR023201	UniProt:M0SCK4	PFAM:PF00344
PIRSF:PIRSF004557	PRINTS:PR00303	PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha
InterPro:SecY_dom_sf	TMHMM:TMhelix	UniParc:UPI000295FC31	SEG:seg	:	:

Description

Putative Preprotein translocase subunit secY [Source:GMGC_GENE;Acc:GSMUA_Achr3G07370_001]

Coordinates

chr3:-:5049635..5073036

Molecular Weight (calculated)

56202.8 Da

IEP (calculated)

8.987

GRAVY (calculated)

0.329

Length

506 amino acids

Sequence
(BLAST)

001: MLFCSLNNNT TQAPSFEAKE RFALMRSDDE AADLLGSKEK GVASNASFEE VRAKRFNNSF LNFTRLGSII DDAMESFFKS EIRRRLFVTA VLIIVSRLGY
101: FIPLPGFDRR LIPDTYLSFA AGSTDELGDF TSELKLSLFQ LGLGPQISAS ILMQVLCHVV PSLVKLRKEG LDGHEKIKSY IWWTSLGFAV LGAIIVACSS
201: MQYSIYAASD RAKHVAVTSF LLVIGAMFMT WICDTISESG FGHGSSLIIC AGILTGYTET LQKMLAQLSG NMLSWWPYIL SVLGIFMVVT MWAVLVTEGC
301: RKIKLQYYGF KLASSTRHGG SPVTEVEPYI PFNINPTGMQ PVLTTTYLLA FPSIMASIFG APFWENLKDI LNPGTSVGAK PWVYYTIYAF FVFLFNIFDI
401: ANLPKEIADY MTKMGARIPN VKPGKATIEY LAKIQTSTRF WGGLLLSVLA TSSTLLDHYL RHINEGFAVG LTSVLIIVGS IIELRRSYQA YNVMPALSKV
501: LRRYGV

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.