Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23936 | Canola | plastid | 88.87 | 89.02 |
| Bra022846.1-P | Field mustard | plastid | 85.74 | 88.51 |
| CDX84779 | Canola | plastid | 86.96 | 88.18 |
| KRH38249 | Soybean | cytosol | 17.04 | 85.22 |
| GSMUA_Achr3P07370_001 | Banana | plasma membrane | 60.0 | 68.18 |
| CDY05267 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 13.04 | 67.57 |
| TraesCS1A01G248600.1 | Wheat | plastid | 59.3 | 64.46 |
| TraesCS1D01G248100.2 | Wheat | plastid | 59.48 | 64.41 |
| HORVU1Hr1G062340.4 | Barley | plastid | 59.3 | 64.22 |
| TraesCS1B01G259300.2 | Wheat | plastid | 59.13 | 64.03 |
| Zm00001d038128_P004 | Maize | plastid | 58.26 | 63.93 |
| VIT_07s0104g00040.t01 | Wine grape | cytosol | 66.78 | 62.64 |
| KXG21937 | Sorghum | plastid | 58.26 | 62.27 |
| Os05t0397700-01 | Rice | plastid | 58.09 | 61.62 |
| Solyc09g065120.2.1 | Tomato | cytosol, plastid | 61.57 | 61.46 |
| CDX84169 | Canola | plasma membrane | 20.87 | 54.55 |
| CDY62161 | Canola | golgi, plastid, vacuole | 13.04 | 53.57 |
| CDX72502 | Canola | cytosol, nucleus, plasma membrane | 15.65 | 50.28 |
| CDX92207 | Canola | cytosol | 13.74 | 35.11 |
| CDY68266 | Canola | cytosol, nucleus | 14.26 | 33.06 |
| CDY51931 | Canola | cytosol, golgi, nucleus | 14.09 | 31.52 |
| Bra039109.1-P | Field mustard | nucleus | 15.3 | 30.77 |
| Bra029080.1-P | Field mustard | mitochondrion | 10.96 | 27.75 |
| AT2G18710.1 | Thale cress | plastid | 21.91 | 22.87 |
Protein Annotations
| Gene3D:1.10.3370.10 | MapMan:23.1.4.2 | EntrezGene:817711 | ProteinID:AAD24832.1 | ProteinID:AEC08557.1 | ArrayExpress:AT2G31530 |
| EnsemblPlantsGene:AT2G31530 | RefSeq:AT2G31530 | TAIR:AT2G31530 | RefSeq:AT2G31530-TAIR-G | EnsemblPlants:AT2G31530.1 | TAIR:AT2G31530.1 |
| EMBL:AY062590 | EMBL:AY093354 | EMBL:BX820289 | Symbol:EMB2289 | UniProt:F4IQV7 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009501 |
| GO:GO:0009507 | GO:GO:0009526 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009658 |
| GO:GO:0009987 | GO:GO:0010027 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0031969 | GO:GO:0033097 | GO:GO:0072598 | InterPro:IPR023201 | RefSeq:NP_180711.4 | PFAM:PF00344 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR00303 | PANTHER:PTHR10906 | PANTHER:PTHR10906:SF2 | SUPFAM:SSF103491 | InterPro:SecY/SEC61-alpha |
| InterPro:SecY_dom_sf | TMHMM:TMhelix | UniParc:UPI0001A7B015 | SEG:seg | : | : |
Description
SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
Coordinates
chr2:+:13427011..13430632
Molecular Weight (calculated)
64715.1 Da
IEP (calculated)
9.435
GRAVY (calculated)
0.198
Length
575 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.