CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 5
extracellular 3
endoplasmic reticulum 3
vacuole 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38249	Soybean	cytosol	29.09	55.65
CDY62161	Canola	golgi, plastid, vacuole	19.09	30.0
CDX72502	Canola	cytosol, nucleus, plasma membrane	19.55	24.02
CDX84779	Canola	plastid	56.36	21.87
CDY23936	Canola	plastid	55.0	21.08
AT2G31530.1	Thale cress	plastid	54.55	20.87
GSMUA_Achr3P07370_001	Banana	plasma membrane	45.91	19.96
TraesCS1A01G248600.1	Wheat	plastid	43.18	17.96
Zm00001d038128_P004	Maize	plastid	42.27	17.75
HORVU1Hr1G062340.4	Barley	plastid	42.73	17.7
TraesCS1B01G259300.2	Wheat	plastid	42.73	17.7
TraesCS1D01G248100.2	Wheat	plastid	42.73	17.7
Solyc09g065120.2.1	Tomato	cytosol, plastid	45.45	17.36
KXG21937	Sorghum	plastid	42.27	17.29
Os05t0397700-01	Rice	plastid	42.27	17.16
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	8.64	17.12
VIT_07s0104g00040.t01	Wine grape	cytosol	46.36	16.64
CDX92207	Canola	cytosol	15.91	15.56
CDY51931	Canola	cytosol, golgi, nucleus	16.82	14.4
CDY68266	Canola	cytosol, nucleus	15.45	13.71
CDY49314	Canola	plastid	20.91	8.35
CDY13013	Canola	plastid	20.45	8.18

Protein Annotations

EnsemblPlants:CDX84169	EnsemblPlantsGene:GSBRNA2T00141205001	Gene3D:1.10.3370.10	GO:A0A078D711	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	InterPro:IPR023201	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf
PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	PFAM:PF00344	ProteinID:CDX84169	ProteinID:CDX84169.1	SEG:seg
SUPFAM:SSF103491	TMHMM:TMhelix	UniParc:UPI0004EE0C8D	MapMan:35.1	:	:

Description

BnaC04g09310D

Coordinates

chrLK031836:+:431939..433564

Molecular Weight (calculated)

25352.0 Da

IEP (calculated)

9.481

GRAVY (calculated)

0.286

Length

220 amino acids

Sequence
(BLAST)

001: MCMPVWLYWT FLKITKYNIL YSCKLRENIF FSIFFSLFLH FCSWSSSLGF SVCDEGSKPR TDRNNHQSSI FVLVFSEVLR IGCLTCWACW AFSRIVGSAF
101: LLHVKEILNP ESTVGAPSWV YYSVYAFFVF LFNIFDIANL PKEIADYLNK MGARIPNIKP GKATIEYLTK IQASTRFWDK AKLSFLATTS SVGSIIELRR
201: SYHAYNVMQS LSKALKMYGV

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.