CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62161	Canola	golgi, plastid, vacuole	41.44	32.86
CDX72502	Canola	cytosol, nucleus, plasma membrane	47.75	29.61
CDX92207	Canola	cytosol	42.34	20.89
CDY68266	Canola	cytosol, nucleus	44.14	19.76
CDY51931	Canola	cytosol, golgi, nucleus	40.54	17.51
Bra029080.1-P	Field mustard	mitochondrion	32.43	15.86
CDX84779	Canola	plastid	72.07	14.11
CDY23936	Canola	plastid	71.17	13.76
GSMUA_Achr3P07370_001	Banana	plasma membrane	60.36	13.24
AT2G31530.1	Thale cress	plastid	67.57	13.04
TraesCS1D01G248100.2	Wheat	plastid	61.26	12.81
TraesCS1B01G259300.2	Wheat	plastid	61.26	12.81
HORVU1Hr1G062340.4	Barley	plastid	61.26	12.81
Zm00001d038128_P004	Maize	plastid	60.36	12.79
TraesCS1A01G248600.1	Wheat	plastid	60.36	12.67
KXG21937	Sorghum	plastid	59.46	12.27
Os05t0397700-01	Rice	plastid	59.46	12.18
VIT_07s0104g00040.t01	Wine grape	cytosol	60.36	10.93
Solyc09g065120.2.1	Tomato	cytosol, plastid	51.35	9.9
CDX84169	Canola	plasma membrane	17.12	8.64
CDY13013	Canola	plastid	27.03	5.45
CDY49314	Canola	plastid	26.13	5.26
KRH38249	Soybean	cytosol	3.6	3.48

Protein Annotations

EnsemblPlants:CDY05267	EnsemblPlantsGene:GSBRNA2T00120091001	Gene3D:1.10.3370.10	GO:A0A078EWC9	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	InterPro:IPR023201	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf
PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	PFAM:PF00344	ProteinID:CDY05267	ProteinID:CDY05267.1	SUPFAM:SSF103491
TMHMM:TMhelix	UniParc:UPI0004EF2979	MapMan:35.1	:	:	:

Description

BnaC05g45360D

Coordinates

chrLK031960:-:720570..721136

Molecular Weight (calculated)

12231.9 Da

IEP (calculated)

9.185

GRAVY (calculated)

0.233

Length

111 amino acids

Sequence
(BLAST)

001: MFAVAVTEEC RKIKLQYYGF KLASASASRE GSPITEVEPY IPFNINPAGM QPVLTTTYLL AFPSILASIV GSPFLLHVKE ILNLKVQSGH RHGFTTQSMR
101: FSCFSSTSLT L

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.