Factsheet for VIT_07s0104g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67197	Soybean	plastid	68.84	74.82
GSMUA_Achr3P07370_001	Banana	plasma membrane	60.03	72.73
Solyc09g065120.2.1	Tomato	cytosol, plastid	63.95	68.06
CDX84779	Canola	plastid	62.15	67.2
Bra022846.1-P	Field mustard	plastid	60.85	66.97
AT2G31530.1	Thale cress	plastid	62.64	66.78
CDY23936	Canola	plastid	62.48	66.72
TraesCS1B01G259300.2	Wheat	plastid	56.93	65.72
HORVU1Hr1G062340.4	Barley	plastid	56.93	65.72
TraesCS1A01G248600.1	Wheat	plastid	56.61	65.6
TraesCS1D01G248100.2	Wheat	plastid	56.77	65.54
Zm00001d038128_P004	Maize	plastid	55.3	64.69
Os05t0397700-01	Rice	plastid	56.12	63.47
KXG21937	Sorghum	plastid	55.46	63.2
KRG95514	Soybean	plastid	36.54	62.05
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	10.93	60.36
CDY62161	Canola	golgi, plastid, vacuole	10.6	46.43
CDX84169	Canola	plasma membrane	16.64	46.36
CDX72502	Canola	cytosol, nucleus, plasma membrane	12.72	43.58
CDX92207	Canola	cytosol	11.58	31.56
CDY68266	Canola	cytosol, nucleus	12.23	30.24
Bra039109.1-P	Field mustard	nucleus	13.38	28.67
Bra029080.1-P	Field mustard	mitochondrion	9.95	26.87
CDY51931	Canola	cytosol, golgi, nucleus	10.93	26.07
VIT_11s0065g00940.t01	Wine grape	plastid	19.25	21.61

Protein Annotations

Gene3D:1.10.3370.10	EntrezGene:100256337	wikigene:100256337	MapMan:23.1.4.2	ProteinID:CBI32373	ProteinID:CBI32373.3
UniProt:D7TPF0	EMBL:FN596005	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016021	InterPro:IPR023201	EntrezGene:LOC100256337	wikigene:LOC100256337	PFAM:PF00344
PRINTS:PR00303	PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf
TMHMM:TMhelix	UniParc:UPI0001BE3A6A	ArrayExpress:VIT_07s0104g00040	EnsemblPlantsGene:VIT_07s0104g00040	EnsemblPlants:VIT_07s0104g00040.t01	RefSeq:XP_002272499
RefSeq:XP_002272499.1	RefSeq:XP_010652152.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:1348012..1364568

Molecular Weight (calculated)

68903.0 Da

IEP (calculated)

8.730

GRAVY (calculated)

0.225

Length

613 amino acids

Sequence
(BLAST)

001: MSSEVEDWSM EMSTFAFSCV PEQLWTLLSG ASLAMEATLL SSHHFNPRFF SPKPFKFPGG QVEHGLQLCC PFYARTNVSL KLISSESSAR RFSLLSRPFL
101: SRANKKLCVN FSEQLRSDYL NAEATPLQSV NDELFPQRHD DGSDVFGPHN VNNSETLQPR TKMFRNRFLN FARLGSVLNN AAESFFKSEI RRRLFVTAVL
201: LVISRVGYFI PLPGFDRRLM PEDYLSFVSG SVDELGDFAG ELKLSLFQLG ISPQIAASIL MQVLCHVVPS LVKLRKEGLD GHEKIKSYIW WISLGFAILE
301: ALVLACYSLT YSVYAASHRV KHVMVTTLFL VCGAMTMTWI CDKISESGFG QGSSLIICVG ILTGYTDTLY KMLVQLSGGA VSWWPYILAV LGVFTIVTMW
401: AVVVTEGCRK IKLQYYGFKL ASATRDDSPI TEVEPYIPFN INPSGMQPVL TTAYLLAFPS ILASLLRSPF WEHIKEILNP ETSIGAEPWV YYSIYAFFVF
501: VFNIFDIANM PKEIADYLNK MGARIPNIKP GKATIAYLTK IQASTRFWGG LLLSFLATMS TILDHYLRRI NQGFSIGFTS VLIIVGSIIE LRRSYQAYNV
601: MPDLSKALRR YGV

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.