CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92207	Canola	cytosol	53.7	61.33
CDY68266	Canola	cytosol, nucleus	52.14	54.03
CDY62161	Canola	golgi, plastid, vacuole	27.63	50.71
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	17.51	40.54
CDX72502	Canola	cytosol, nucleus, plasma membrane	26.85	38.55
CDX84169	Canola	plasma membrane	14.4	16.82
CDX84779	Canola	plastid	34.24	15.52
CDY23936	Canola	plastid	33.46	14.98
AT2G31530.1	Thale cress	plastid	31.52	14.09
GSMUA_Achr3P07370_001	Banana	plasma membrane	24.9	12.65
Zm00001d038128_P004	Maize	plastid	23.74	11.64
KXG21937	Sorghum	plastid	24.12	11.52
Os05t0397700-01	Rice	plastid	23.35	11.07
TraesCS1A01G248600.1	Wheat	plastid	22.57	10.96
VIT_07s0104g00040.t01	Wine grape	cytosol	26.07	10.93
TraesCS1B01G259300.2	Wheat	plastid	22.18	10.73
TraesCS1D01G248100.2	Wheat	plastid	22.18	10.73
HORVU1Hr1G062340.4	Barley	plastid	21.79	10.55
Solyc09g065120.2.1	Tomato	cytosol, plastid	22.96	10.24
CDY13013	Canola	plastid	14.4	6.73
CDY49314	Canola	plastid	14.4	6.72
KRH38249	Soybean	cytosol	0.39	0.87

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:A0A078IPN9	UniProt:A0A078IPN9	EnsemblPlants:CDY51931	ProteinID:CDY51931
ProteinID:CDY51931.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00004519001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR023201	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF90	SMART:SM00320	SUPFAM:SSF103491	SUPFAM:SSF50978
InterPro:SecY_dom_sf	UniParc:UPI0004EE6451	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

BnaAnng11080DBnaAnng11080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPN9]

Coordinates

chrLK033040:+:52647..56631

Molecular Weight (calculated)

28558.8 Da

IEP (calculated)

5.306

GRAVY (calculated)

-0.198

Length

257 amino acids

Sequence
(BLAST)

001: MSILQEIYLK YPNIPEDESS GDPPAKATPA KSNGAADTES KARQYDDERS EFGGFGCATG KVRSLLSFRQ INHEEEVNRA RYIPQNPFVI ATKTVNAEVK
101: FKAGYLLSGS DDAQICLWDI DATPKNKVID AQQIFKAHEG VVEDVAWHMS HEHLFGSVGD DQYLLVWDLR SPSASKPIQS LVAHSMEPYI PFNINPAGMQ
201: PVLTTTYLLA FPSILASIVG SPFLLHVKEI LNPESTVRAP PWVYYSVYAF CVSLQHL

Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)

001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS

Arabidopsis Description

MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.