CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92207	Canola	cytosol	79.44	87.56
Bra039109.1-P	Field mustard	nucleus	98.39	85.31
CDY62161	Canola	golgi, plastid, vacuole	30.24	53.57
CDY51931	Canola	cytosol, golgi, nucleus	54.03	52.14
CDX72502	Canola	cytosol, nucleus, plasma membrane	33.06	45.81
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	19.76	44.14
CDX84169	Canola	plasma membrane	13.71	15.45
CDX84779	Canola	plastid	34.68	15.17
CDY23936	Canola	plastid	33.87	14.63
AT2G31530.1	Thale cress	plastid	33.06	14.26
GSMUA_Achr3P07370_001	Banana	plasma membrane	27.42	13.44
Zm00001d038128_P004	Maize	plastid	27.82	13.17
Os05t0397700-01	Rice	plastid	28.23	12.92
KXG21937	Sorghum	plastid	27.42	12.64
VIT_07s0104g00040.t01	Wine grape	cytosol	30.24	12.23
Solyc09g065120.2.1	Tomato	cytosol, plastid	28.23	12.15
TraesCS1A01G248600.1	Wheat	plastid	25.4	11.91
HORVU1Hr1G062340.4	Barley	plastid	25.4	11.86
TraesCS1B01G259300.2	Wheat	plastid	25.4	11.86
TraesCS1D01G248100.2	Wheat	plastid	25.4	11.86
CDY13013	Canola	plastid	18.95	8.55
CDY49314	Canola	plastid	18.95	8.53
KRH38249	Soybean	cytosol	0.4	0.87

Protein Annotations

Gene3D:1.10.3370.10	Gene3D:2.130.10.10	MapMan:35.1	GO:A0A078JRK1	UniProt:A0A078JRK1	EnsemblPlants:CDY68266
ProteinID:CDY68266	ProteinID:CDY68266.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00072730001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR023201
ScanProsite:PS00678	PANTHER:PTHR22850	PANTHER:PTHR22850:SF82	SMART:SM00320	SUPFAM:SSF103491	SUPFAM:SSF50978
InterPro:SecY_dom_sf	TMHMM:TMhelix	UniParc:UPI0004EDFBF8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

BnaA03g58630DBnaA03g58630D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JRK1]

Coordinates

chrLK037081:-:4073..5231

Molecular Weight (calculated)

27637.9 Da

IEP (calculated)

5.777

GRAVY (calculated)

-0.067

Length

248 amino acids

Sequence
(BLAST)

001: IDTQHQRGTE SEARQYDDER SEFGGFGCAT GKVQSIQQIN HEGEVNRARY IPQNPFVIAT KTVNAEVKFK AGHLLSGSDD AQICLWDINA TPKNKVIDAQ
101: QIFKGHEGVV EDVAWHMSHE HLFGSVGDDQ YLLYGICVLH LPVNLYSLWL LTPWRCVCKE LNFKSREGSP IPGVEPYIPF NINPAGMQPV LTTTYLLAFS
201: SIIASIVGSP FLLHVKETLN PESTVGAPLW VYYSVYAFLC FSSTSLTL

Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)

001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS

Arabidopsis Description

MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.