CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, vacuole

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72502	Canola	cytosol, nucleus, plasma membrane	64.29	50.28
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	32.86	41.44
CDX92207	Canola	cytosol	55.71	34.67
CDY68266	Canola	cytosol, nucleus	53.57	30.24
CDY51931	Canola	cytosol, golgi, nucleus	50.71	27.63
CDX84169	Canola	plasma membrane	30.0	19.09
CDX84779	Canola	plastid	56.43	13.93
CDY23936	Canola	plastid	55.0	13.41
GSMUA_Achr3P07370_001	Banana	plasma membrane	47.14	13.04
AT2G31530.1	Thale cress	plastid	53.57	13.04
Zm00001d038128_P004	Maize	plastid	42.14	11.26
TraesCS1A01G248600.1	Wheat	plastid	42.14	11.15
KXG21937	Sorghum	plastid	42.86	11.15
HORVU1Hr1G062340.4	Barley	plastid	42.14	11.11
TraesCS1B01G259300.2	Wheat	plastid	42.14	11.11
TraesCS1D01G248100.2	Wheat	plastid	42.14	11.11
Solyc09g065120.2.1	Tomato	cytosol, plastid	44.29	10.76
VIT_07s0104g00040.t01	Wine grape	cytosol	46.43	10.6
Os05t0397700-01	Rice	plastid	40.71	10.52
CDY13013	Canola	plastid	20.71	5.27
CDY49314	Canola	plastid	20.71	5.26
KRH38249	Soybean	cytosol	1.43	1.74

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:A0A078J9I6	UniProt:A0A078J9I6	EnsemblPlants:CDY62161	ProteinID:CDY62161
ProteinID:CDY62161.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00036016001	InterPro:IPR015943
InterPro:IPR023201	PFAM:PF00344	PANTHER:PTHR22850	PANTHER:PTHR22850:SF82	SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha
InterPro:SecY_dom_sf	TMHMM:TMhelix	UniParc:UPI0004EDC839	InterPro:WD40/YVTN_repeat-like_dom_sf	:	:

Description

BnaC05g49470DBnaC05g49470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9I6]

Coordinates

chrLK034106:+:30103..30921

Molecular Weight (calculated)

15670.8 Da

IEP (calculated)

6.228

GRAVY (calculated)

0.297

Length

140 amino acids

Sequence
(BLAST)

001: MPQNPFVIAT KTVNAEVYVF DYSKHPSKPP LDGACNPDLR LRGHSSEGYG FSWKVEPYIP FNINPAGMQP VLTTTYLLAF PSILASIVGS PFLLHVKDIL
101: NPESTVGAPP WVYYSVYAFF VFLFNIFDIV SVTYSFFFSA

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.