Factsheet for Zm00001d038128_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21937	Sorghum	plastid	90.84	88.48
TraesCS1A01G248600.1	Wheat	plastid	82.44	81.66
TraesCS1B01G259300.2	Wheat	plastid	82.25	81.17
TraesCS1D01G248100.2	Wheat	plastid	82.06	80.98
HORVU1Hr1G062340.4	Barley	plastid	81.68	80.6
Os05t0397700-01	Rice	plastid	82.63	79.89
KRH38249	Soybean	cytosol	16.03	73.04
GSMUA_Achr3P07370_001	Banana	plasma membrane	64.89	67.19
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	12.79	60.36
KRH67197	Soybean	plastid	64.31	59.75
CDX84779	Canola	plastid	63.74	58.91
Bra022846.1-P	Field mustard	plastid	62.4	58.71
AT2G31530.1	Thale cress	plastid	63.93	58.26
CDY23936	Canola	plastid	63.74	58.19
Solyc09g065120.2.1	Tomato	cytosol, plastid	61.45	55.9
VIT_07s0104g00040.t01	Wine grape	cytosol	64.69	55.3
KRG95514	Soybean	plastid	33.78	49.03
CDX84169	Canola	plasma membrane	17.75	42.27
CDY62161	Canola	golgi, plastid, vacuole	11.26	42.14
CDX72502	Canola	cytosol, nucleus, plasma membrane	13.36	39.11
CDX92207	Canola	cytosol	12.79	29.78
CDY68266	Canola	cytosol, nucleus	13.17	27.82
Bra029080.1-P	Field mustard	mitochondrion	11.45	26.43
Bra039109.1-P	Field mustard	nucleus	14.31	26.22
CDY51931	Canola	cytosol, golgi, nucleus	11.64	23.74
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	9.16	22.75
Zm00001d000350_P001	Maize	plastid	15.65	21.35

Protein Annotations

Gene3D:1.10.3370.10	EntrezGene:100272509	EntrezGene:100285648	MapMan:23.1.4.2	ProteinID:AQK85729.1	UniProt:B6U7Q0
EMBL:BT083925	EMBL:EU973265	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009526	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987
GO:GO:0010027	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0072598
InterPro:IPR023201	PFAM:PF00344	PIRSF:PIRSF004557	PRINTS:PR00303	PANTHER:PTHR10906	PANTHER:PTHR10906:SF2
SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf	TMHMM:TMhelix	UniParc:UPI000182F574	EnsemblPlantsGene:Zm00001d038128
EnsemblPlants:Zm00001d038128_P004	EnsemblPlants:Zm00001d038128_T004	SEG:seg	:	:	:

Description

Preprotein translocase subunit SCY2 chloroplastic

Coordinates

chr6:-:148806672..148816035

Molecular Weight (calculated)

58061.3 Da

IEP (calculated)

9.974

GRAVY (calculated)

0.314

Length

524 amino acids

Sequence
(BLAST)

001: MSPSLVLVHS LPLPSRRALP IQLPRRLAPK HPSQWSLRTP RRLAVFARAS ASVVVSPHGE GGGGTAAGRK STGYRNRFLD LARLGAVAEG AAEAFFRSEI
101: RRRLAVTAAL IVLSRVGYFI PLPGFDRRLI PDSYLSFSAL PADDLGDFSS ELKLSFFQLG ISHQISASIV MQVLCHVLPS LEKLRKEGLD GHEKLKGYIW
201: WLSLWFATVA AFTVSCFSLQ YSVYAASYRV KHVIITSLLL VLGAMSMTWI CDTITEFGFG HGSSLIICVG ILTGYTDTLH KMITQFSGNF SYCWPYILGV
301: AGIFMILTMG AVLVTEGCRK IKLQYYGFKL ASGAGNESSP VTEVEPYIPF NINPTGMQPL LTTSYLLAFP SIMASIFASP FWENLREILN PKTSTGGSPW
401: VYYLTYAFLV FIFNIFDIAN LPKEISDYLN KMCARVPRIK PGRATVDYLT KIQTSTRFWG GLLLSLLATS SLLLDRYLRQ INEGLSIGFT SVLIIVGSII
501: ELRRSYQAYN VMPALSKVLR RYGA

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.