Factsheet for Bra022846.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84779	Canola	plastid	98.92	97.18
AT2G31530.1	Thale cress	plastid	88.51	85.74
KRH38249	Soybean	cytosol	17.59	85.22
GSMUA_Achr3P07370_001	Banana	plasma membrane	60.14	66.21
TraesCS1A01G248600.1	Wheat	plastid	59.78	62.95
Zm00001d038128_P004	Maize	plastid	58.71	62.4
HORVU1Hr1G062340.4	Barley	plastid	59.25	62.15
TraesCS1D01G248100.2	Wheat	plastid	59.25	62.15
TraesCS1B01G259300.2	Wheat	plastid	58.89	61.77
VIT_07s0104g00040.t01	Wine grape	cytosol	66.97	60.85
KXG21937	Sorghum	plastid	58.53	60.59
Os05t0397700-01	Rice	plastid	58.35	59.96
Solyc09g065120.2.1	Tomato	cytosol, plastid	61.22	59.2
Bra039109.1-P	Field mustard	nucleus	16.16	31.47
Bra029080.1-P	Field mustard	mitochondrion	11.13	27.31
Bra038815.1-P	Field mustard	plastid	22.8	23.05

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.4.2	EnsemblPlantsGene:Bra022846	EnsemblPlants:Bra022846.1	EnsemblPlants:Bra022846.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009526
GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0010027	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0072598	InterPro:IPR023201	UniProt:M4E246	PFAM:PF00344
PRINTS:PR00303	PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf
TMHMM:TMhelix	UniParc:UPI00025402C4	SEG:seg	:	:	:

Description

AT2G31530 (E=2e-138) EMB2289, SCY2 | EMB2289 (EMBRYO DEFECTIVE 2289); P-P-bond-hydrolysis-driven protein transmembrane transporter

Coordinates

chrA03:+:7378922..7381998

Molecular Weight (calculated)

62490.5 Da

IEP (calculated)

9.624

GRAVY (calculated)

0.265

Length

557 amino acids

Sequence
(BLAST)

001: MNSSQACFFH SPLRPISLPQ PSFGFVSKRD PSLCYQPFRS RRCLTTNLNI SRTRETCFLH LNRRERKSFS VSYSDKHINE SIGSDEVHTD ALDVEIVPQS
101: SVLSKALQDN NNRPKSFRNR FLDFVRISSV LNTAAERFFK SEIRRRLFVT AVLLVLSRVG YFIPLPGFDR RLIPQDYLSF VSGSVEELGE FGAEIKLSLF
201: QLGLSPQIIA SILMQVLCHV LPSLVKLRKE GLDGHEKIKS YIWWLSFFFA IVEGIVVACT SLQYSVFAAT AQVKHVMLTA SLLVCGAMTM TWLCHGSSLI
301: ICVGILTGYT ETLHKMLNQI SGSFTNWLPY LLGVLGIFTV VTMFAVVVTE GCRKIKLQYY GFKLASASRE GSPITEVEPY IPFNINPAGM QPVLTTTYLL
401: AFPSILASIV GSPFLLHVKE ILNPESTVGP PPWVYYSVYA FFVFLFNIFD IANLPKEIAD YLNKMGARIP NIKPGKATIE YLTKIQASTR FWGGLLLSFL
501: ATSSSVLDHY LRSINQGFSI GFTSVLIIVG SIIELRRSYH AYNVMPSLSK ALKRYGV

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.