Factsheet for HORVU1Hr1G062340.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G248100.2	Wheat	plastid	96.99	96.99
TraesCS1A01G248600.1	Wheat	plastid	93.22	93.57
TraesCS1B01G259300.2	Wheat	plastid	91.34	91.34
Zm00001d038128_P004	Maize	plastid	80.6	81.68
KXG21937	Sorghum	plastid	81.73	80.67
Os05t0397700-01	Rice	plastid	81.36	79.7
KRH38249	Soybean	cytosol	15.82	73.04
GSMUA_Achr3P07370_001	Banana	plasma membrane	66.29	69.57
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	12.81	61.26
KRH67197	Soybean	plastid	64.78	60.99
CDX84779	Canola	plastid	63.65	59.61
AT2G31530.1	Thale cress	plastid	64.22	59.3
Bra022846.1-P	Field mustard	plastid	62.15	59.25
CDY23936	Canola	plastid	63.65	58.88
VIT_07s0104g00040.t01	Wine grape	cytosol	65.72	56.93
Solyc09g065120.2.1	Tomato	cytosol, plastid	61.58	56.77
KRG95514	Soybean	plastid	34.27	50.42
CDX84169	Canola	plasma membrane	17.7	42.73
CDY62161	Canola	golgi, plastid, vacuole	11.11	42.14
CDX72502	Canola	cytosol, nucleus, plasma membrane	12.99	38.55
CDX92207	Canola	cytosol	11.68	27.56
Bra029080.1-P	Field mustard	mitochondrion	11.11	25.99
CDY68266	Canola	cytosol, nucleus	11.86	25.4
Bra039109.1-P	Field mustard	nucleus	12.62	23.43
CDY51931	Canola	cytosol, golgi, nucleus	10.55	21.79
HORVU5Hr1G049980.4	Barley	plastid	22.03	19.9

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.4.2	UniProt:A0A287FWT1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009526	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0010027	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0072598	EnsemblPlantsGene:HORVU1Hr1G062340	EnsemblPlants:HORVU1Hr1G062340.4	InterPro:IPR023201	PFAM:PF00344
PRINTS:PR00303	PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf
TMHMM:TMhelix	UniParc:UPI000B486ED0	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:449337750..449350147

Molecular Weight (calculated)

58775.3 Da

IEP (calculated)

9.977

GRAVY (calculated)

0.266

Length

531 amino acids

Sequence
(BLAST)

001: MSSSLALSLP PRCALPLPPL RLAPKHPSLR ANQCHLLLRT TERPLPPPRR LLLPPRASSS ATTPAEPARE GGAGGKKVPG FRNRFLDLAR LGAVAEGAAE
101: AFFRSEIRRR LAVTAVLIVL SRVGYFVPLP GFDRRLIPDS YLSFAPLPAD DLVDFASELK LSFFQLGISH QISASIVMQV LCHVLPSLEK IRKEGLDGHE
201: KIKSYIWWLS LGFAIVAACT VSCYSLQYSI YAASYRVKHV ILTSFLLVLG AMSTTWICDT ITESGFGHGS SLIICVGILT GYTNTLHKML TQFSGNVHTS
301: WPYILGVAGI FMMVTMGAVL VTEGCRKIKL QYYGFKLASS ARNENSPVTE VEPYIPFNIN PTGMQPLLTT SYLLAFPSIM ASIFRSPFWE NLKEILNPMT
401: SAGGSPWVYY LTYAFFVFVF NIFDIANLPK EISDYLNKMS ARVPKIKPGR ATVDYLTKIQ TSTRFWGGLL LSLLATSSLL LDRYLRQINE GFSIGFTSVL
501: IIVGSIIELR RSYQAYNVMP ALSKVLKRYG A

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.