Factsheet for Bra039109.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68266	Canola	cytosol, nucleus	85.31	98.39
Bra022846.1-P	Field mustard	plastid	31.47	16.16
Bra029080.1-P	Field mustard	mitochondrion	12.24	15.42
AT2G31530.1	Thale cress	plastid	30.77	15.3
Zm00001d038128_P004	Maize	plastid	26.22	14.31
GSMUA_Achr3P07370_001	Banana	plasma membrane	24.48	13.83
Os05t0397700-01	Rice	plastid	25.87	13.65
KXG21937	Sorghum	plastid	25.52	13.57
VIT_07s0104g00040.t01	Wine grape	cytosol	28.67	13.38
Solyc09g065120.2.1	Tomato	cytosol, plastid	26.22	13.02
TraesCS1A01G248600.1	Wheat	plastid	23.78	12.85
TraesCS1B01G259300.2	Wheat	plastid	23.78	12.81
HORVU1Hr1G062340.4	Barley	plastid	23.43	12.62
TraesCS1D01G248100.2	Wheat	plastid	23.43	12.62
Bra038815.1-P	Field mustard	plastid	18.88	9.8
KRH38249	Soybean	cytosol	0.35	0.87

Protein Annotations

Gene3D:1.10.3370.10	Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra039109	EnsemblPlants:Bra039109.1	EnsemblPlants:Bra039109.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR023201
UniProt:M4FDD8	ScanProsite:PS00678	PANTHER:PTHR22850	PANTHER:PTHR22850:SF82	SMART:SM00320	SUPFAM:SSF103491
SUPFAM:SSF50978	InterPro:SecY_dom_sf	UniParc:UPI0002547869	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

AT2G31530 (E=2e-034) EMB2289, SCY2 | EMB2289 (EMBRYO DEFECTIVE 2289); P-P-bond-hydrolysis-driven protein transmembrane transporter

Coordinates

chrA05:+:23916516..23918686

Molecular Weight (calculated)

32181.4 Da

IEP (calculated)

5.974

GRAVY (calculated)

-0.027

Length

286 amino acids

Sequence
(BLAST)

001: MFFCCYVPSP HIWPEIVQPP EPTTFFLDVS SVFSVRRRID TQHQRGTESE ARQYDDERSE FGGFGCATGK VQSIQQINHE GEVNRARYIP QYPFVIATKT
101: VNAEVKFKAG HLLSGSDDAQ ICLWDINATP KNKVIDAQQI FKGHEGVVED VAWHMSHEHL FGSVGDDQYL LYGICVLHLP VNLYSLWLLT PWRCVCKELN
201: FKSREGSPIP GVEPYIPFNI NPAGMQPVLT TTYLLAFSSI LASIVGSPFL LHVKEILNPE STVGAPPWVY YSVYAFLCFS STSLTL

Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)

001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS

Arabidopsis Description

MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.