Factsheet for Bra038815.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035669.1-P
Bra036909.1-P
Bra038815.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	Bra038815.1-P	AT2G18710.1	15988575
AT2G18710.1	Bra035669.1-P	AT2G28800.1	12217076
AT2G18710.1	Bra035669.1-P	AT2G28800.1	15988575
AT2G18710.1	Bra036909.1-P	AT4G14870.1	10207046
AT2G18710.1	Bra036909.1-P	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49314	Canola	plastid	99.46	99.46
CDY13013	Canola	plastid	97.1	97.27
AT2G18710.1	Thale cress	plastid	92.38	92.38
KRH63143	Soybean	endoplasmic reticulum	27.04	83.24
KRH54991	Soybean	plastid	76.04	77.59
PGSC0003DMT400070672	Potato	plastid	75.32	77.14
Solyc07g006520.2.1	Tomato	plastid	74.77	76.87
VIT_11s0065g00940.t01	Wine grape	plastid	74.95	75.64
GSMUA_Achr4P12710_001	Banana	plastid	73.87	73.07
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	27.77	72.51
Os08t0254500-02	Rice	plastid	72.96	72.3
EES14786	Sorghum	plastid	72.23	72.1
TraesCS5D01G164800.1	Wheat	plastid	71.69	72.08
TraesCS5B01G157500.1	Wheat	plastid	71.51	71.9
HORVU5Hr1G049980.4	Barley	plastid	71.51	67.01
Zm00001d000350_P001	Maize	plastid	46.28	66.41
TraesCS5A01G159800.1	Wheat	cytosol	71.14	65.33
Bra022846.1-P	Field mustard	plastid	23.05	22.8
Bra039109.1-P	Field mustard	nucleus	9.8	18.88
Bra029080.1-P	Field mustard	mitochondrion	6.9	16.74

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.5.2	EnsemblPlantsGene:Bra038815	EnsemblPlants:Bra038815.1	EnsemblPlants:Bra038815.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021
InterPro:IPR023201	UniProt:M4FCJ6	HAMAP:MF_01465	PFAM:PF00344	PRINTS:PR00303	ScanProsite:PS00755
ScanProsite:PS00756	PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	SUPFAM:SSF103491	InterPro:SecY	InterPro:SecY/SEC61-alpha
InterPro:SecY_CS	InterPro:SecY_dom_sf	TIGRFAMs:TIGR00967	TMHMM:TMhelix	UniParc:UPI00025410FC	SEG:seg

Description

AT2G18710 (E=8e-243) SCY1 | SCY1 (SecY Homolog 1); P-P-bond-hydrolysis-driven protein transmembrane transporter

Coordinates

chrA07:+:1325432..1328039

Molecular Weight (calculated)

59319.7 Da

IEP (calculated)

9.802

GRAVY (calculated)

0.220

Length

551 amino acids

Sequence
(BLAST)

001: MITVSQVSSY SSSSSNLASL SRLNPKSCWR LRSSSLYGPS FSIPTKTRNT CCKANSWKNL GLVINSRSSE VSTFDPLGIN PKEASGLSSI WESLLSVLSP
101: SFESSSGSKR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSLLTT LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQAVYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTAA EALQEGNYTG LATIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISSL KNVAYGLNPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.