Factsheet for GSMUA_Achr4P12710_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P05390_001
GSMUA_Achr4P12710_001
GSMUA_Achr5P28630_001
GSMUA_Achr9P03990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	GSMUA_Achr4P12710_001	AT2G18710.1	15988575
AT2G18710.1	GSMUA_Achr5P28630_001	AT2G28800.1	12217076
AT2G18710.1	GSMUA_Achr9P03990_001	AT2G28800.1	12217076
AT2G18710.1	GSMUA_Achr5P28630_001	AT2G28800.1	15988575
AT2G18710.1	GSMUA_Achr9P03990_001	AT2G28800.1	15988575
AT2G18710.1	GSMUA_Achr3P05390_001	AT4G14870.1	10207046
AT2G18710.1	GSMUA_Achr3P05390_001	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63143	Soybean	endoplasmic reticulum	27.47	85.47
VIT_11s0065g00940.t01	Wine grape	plastid	77.56	79.12
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	29.8	78.67
KRH54991	Soybean	plastid	74.15	76.48
Solyc07g006520.2.1	Tomato	plastid	72.89	75.75
PGSC0003DMT400070672	Potato	plastid	73.07	75.65
EES14786	Sorghum	plastid	74.69	75.36
CDY49314	Canola	plastid	73.25	74.05
Bra038815.1-P	Field mustard	plastid	73.07	73.87
Os08t0254500-02	Rice	plastid	73.61	73.74
AT2G18710.1	Thale cress	plastid	72.89	73.68
CDY13013	Canola	plastid	72.35	73.27
TraesCS5B01G157500.1	Wheat	plastid	71.1	72.26
TraesCS5D01G164800.1	Wheat	plastid	70.56	71.72
HORVU5Hr1G049980.4	Barley	plastid	72.17	68.37
Zm00001d000350_P001	Maize	plastid	46.86	67.97
TraesCS5A01G159800.1	Wheat	cytosol	71.63	66.5
GSMUA_Achr3P07370_001	Banana	plasma membrane	22.8	25.1

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.5.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr4G12710_001	EnsemblPlants:GSMUA_Achr4P12710_001	EnsemblPlants:GSMUA_Achr4T12710_001
InterPro:IPR023201	UniProt:M0SND6	HAMAP:MF_01465	PFAM:PF00344	PRINTS:PR00303	ScanProsite:PS00755
ScanProsite:PS00756	PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	SUPFAM:SSF103491	InterPro:SecY	InterPro:SecY/SEC61-alpha
InterPro:SecY_CS	InterPro:SecY_dom_sf	TIGRFAMs:TIGR00967	TMHMM:TMhelix	UniParc:UPI000294D20B	SEG:seg

Description

Preprotein translocase subunit secY, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G12710_001]

Coordinates

chr4:+:9412984..9420881

Molecular Weight (calculated)

60209.6 Da

IEP (calculated)

9.806

GRAVY (calculated)

0.191

Length

557 amino acids

Sequence
(BLAST)

001: MLLSARELLS APSHGIHFST FPSARSPAAS LAFARTRGGP CRASSSGAAD AEPRRRSVPW DTLRLNFSDD SRCIQPSDFS VFDPLGLNKE SSLGLGALWE
101: SVLDFFSQTF ESTASSKKDK SSSKRGVAAA IEDSSIDIGD FFKGPLPGKF LKLLGYLTLS RLGVYVPLGG VNREAFVGNL DQNSLLSTLD SFSGGGIGRL
201: GVCSLGIVPF INAQIVFQLL TQIYPKLQDL QRREGEAGRK KVLQYTRYAS VGFAVFQAIG QVVYLRPYVN DFSTEWVLSS VVLLTLGSVF TTYIGERISD
301: LKLGNGTSLL IFTSIISYLP ASFGRTIAQA FQDGNYVGLA TITLSFFLLV LGIVYVQEAE RKIPLNYASR YRSGGLQKSA YLPFKVNSSG VMPIIFSTSS
401: LALPGTLARF TGLTALKKAA VALNPGGPLY LPTNVLLIAF FNYYYTFLQL DPDDVSEQLK RQGASIPLVR PGKSTAAFLK TVLSRISVLG SAFLAVLAAG
501: PSVIEQTTHL TAFRGFAGTS ILILVGCATD TARKVQAEII SQKYKNIEFY DINQYGP

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.