Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P03990_001 | Banana | mitochondrion, plastid | 45.0 | 70.95 |
| VIT_06s0004g04460.t01 | Wine grape | plastid | 44.86 | 69.01 |
| HORVU3Hr1G013690.6 | Barley | mitochondrion | 40.86 | 68.59 |
| PGSC0003DMT400001063 | Potato | plastid | 43.43 | 67.86 |
| Solyc11g066110.1.1 | Tomato | plastid | 43.29 | 67.79 |
| KRH24811 | Soybean | plastid | 43.57 | 67.78 |
| KRH29812 | Soybean | plastid | 43.29 | 67.33 |
| CDX77209 | Canola | plastid | 42.0 | 66.22 |
| CDY31733 | Canola | plastid | 42.0 | 66.22 |
| Bra035669.1-P | Field mustard | plastid | 42.14 | 66.0 |
| Zm00001d039852_P001 | Maize | plastid | 42.14 | 64.84 |
| Os01t0151200-01 | Rice | plasma membrane | 42.43 | 64.71 |
| KXG31875 | Sorghum | plastid | 42.0 | 64.62 |
| TraesCS3A01G075700.1 | Wheat | plastid | 41.43 | 64.59 |
| TraesCS3B01G089800.1 | Wheat | plastid | 41.29 | 64.37 |
| TraesCS3D01G075800.1 | Wheat | plastid | 41.29 | 64.22 |
| AT2G28800.1 | Thale cress | plastid | 41.43 | 62.77 |
| Zm00001d008625_P001 | Maize | mitochondrion | 41.57 | 62.58 |
| GSMUA_Achr5P25520_001 | Banana | plastid | 33.43 | 43.49 |
Protein Annotations
| MapMan:23.1.7.5 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0032977 |
| GO:GO:0051205 | EnsemblPlantsGene:GSMUA_Achr5G28630_001 | EnsemblPlants:GSMUA_Achr5P28630_001 | EnsemblPlants:GSMUA_Achr5T28630_001 | UniProt:M0T2I7 | InterPro:Membr_insert_YidC/Oxa1_C |
| PFAM:PF02096 | PANTHER:PTHR12428 | PANTHER:PTHR12428:SF19 | TIGRFAMs:TIGR03592 | TMHMM:TMhelix | UniParc:UPI000295A6E4 |
| InterPro:YidC/ALB3/OXA1/COX18 | SEG:seg | : | : | : | : |
Description
Inner membrane protein PPF-1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G28630_001]
Coordinates
chr5:-:28723987..28733550
Molecular Weight (calculated)
77514.3 Da
IEP (calculated)
8.251
GRAVY (calculated)
-0.281
Length
700 amino acids
Sequence
(BLAST)
(BLAST)
001: MENMYMWVFK KRPENALGKM QLRSYMNGHS RLGVPQFPFS IDKGFVRSHR MQRKHYRGLS NPLCIHGIEV VWSPNLLVVP EVDLKKWLEL TGRDLNFSIP
101: PEAGDFGAWR NLPGTDFELE RPPPPLKSTS HPNSRKLLND TGLKLSTQPS NHACGDSMDL SPKCSKRRKE ISPLDTDEDC CLSSYSYLDR PEIHPAVPSW
201: VNEFTGAMRH ACGPVTAAKT IYEDEGGYLI MVSLPFSDQQ KVKVSWKNNL THGFVREIPL ATRIPEDAKL EAYYDETGTL LEIMIPKYRV GPEEHEVHVS
301: MHPPHLGSNE LLVEGLLYTL ADAAVATDAT AAAPDASTVV QKNGGWFGFI SDAMEVVLKV LKDGLTAIHV PYSYGFAIIL LTVIVKVLTL PLTKQQVEST
401: LAMQNLQPKI KAIQERYAGN QERIQLETAR LYKQAGVNPL AGCFPTLATI PVWIGLYQAL SNVANEGLLT EGFFWIPSLG GPTTIAARQS GSGISWLIPF
501: VDGHPPLGWS DTAAYLVLPV LLVVSQYVSM EIMKPPQTND PATKNSLLVF KFLPLMIGYF ALSVPSGLSI YWFTNNVLST AQQIWLRKLG GAKPVVSGDA
601: GGIISAGRAK RSASQPERTG ERFKQLKEQE NRKMLNKALP IEEGQGLAST SNADDESDGE SIDKGEVPEE TYASNESKKL PQYNTTPKKG KRSKRKRVVQ
101: PEAGDFGAWR NLPGTDFELE RPPPPLKSTS HPNSRKLLND TGLKLSTQPS NHACGDSMDL SPKCSKRRKE ISPLDTDEDC CLSSYSYLDR PEIHPAVPSW
201: VNEFTGAMRH ACGPVTAAKT IYEDEGGYLI MVSLPFSDQQ KVKVSWKNNL THGFVREIPL ATRIPEDAKL EAYYDETGTL LEIMIPKYRV GPEEHEVHVS
301: MHPPHLGSNE LLVEGLLYTL ADAAVATDAT AAAPDASTVV QKNGGWFGFI SDAMEVVLKV LKDGLTAIHV PYSYGFAIIL LTVIVKVLTL PLTKQQVEST
401: LAMQNLQPKI KAIQERYAGN QERIQLETAR LYKQAGVNPL AGCFPTLATI PVWIGLYQAL SNVANEGLLT EGFFWIPSLG GPTTIAARQS GSGISWLIPF
501: VDGHPPLGWS DTAAYLVLPV LLVVSQYVSM EIMKPPQTND PATKNSLLVF KFLPLMIGYF ALSVPSGLSI YWFTNNVLST AQQIWLRKLG GAKPVVSGDA
601: GGIISAGRAK RSASQPERTG ERFKQLKEQE NRKMLNKALP IEEGQGLAST SNADDESDGE SIDKGEVPEE TYASNESKKL PQYNTTPKKG KRSKRKRVVQ
001: MARVLVSSPS SFFGSPLIKP SSSLRHSGVG GGGTAQFLPY RSNNNKLFTT STTVRFSLNE IPPFHGLDSS VDIGAIFTRA ESLLYTIADA AVVGADSVVT
101: TDSSAVQKSG GWFGFISDAM ELVLKILKDG LSAVHVPYAY GFAIILLTII VKAATYPLTK QQVESTLAMQ NLQPKIKAIQ QRYAGNQERI QLETSRLYKQ
201: AGVNPLAGCL PTLATIPVWI GLYQALSNVA NEGLFTEGFF WIPSLGGPTS IAARQSGSGI SWLFPFVDGH PPLGWYDTVA YLVLPVLLIA SQYVSMEIMK
301: PPQTDDPAQK NTLLVFKFLP LMIGYFALSV PSGLSIYWLT NNVLSTAQQV YLRKLGGAKP NMDENASKII SAGRAKRSIA QPDDAGERFR QLKEQEKRSK
401: KNKAVAKDTV ELVEESQSES EEGSDDEEEE AREGALASST TSKPLPEVGQ RRSKRSKRKR TV
101: TDSSAVQKSG GWFGFISDAM ELVLKILKDG LSAVHVPYAY GFAIILLTII VKAATYPLTK QQVESTLAMQ NLQPKIKAIQ QRYAGNQERI QLETSRLYKQ
201: AGVNPLAGCL PTLATIPVWI GLYQALSNVA NEGLFTEGFF WIPSLGGPTS IAARQSGSGI SWLFPFVDGH PPLGWYDTVA YLVLPVLLIA SQYVSMEIMK
301: PPQTDDPAQK NTLLVFKFLP LMIGYFALSV PSGLSIYWLT NNVLSTAQQV YLRKLGGAKP NMDENASKII SAGRAKRSIA QPDDAGERFR QLKEQEKRSK
401: KNKAVAKDTV ELVEESQSES EEGSDDEEEE AREGALASST TSKPLPEVGQ RRSKRSKRKR TV
Arabidopsis Description
ALB3ALB3 [Source:UniProtKB/TrEMBL;Acc:A0A178VUV3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.