Factsheet for GSMUA_AchrUn_randomP21790_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 4
endoplasmic reticulum 3
extracellular 2
golgi 2
plasma membrane 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P12740_001	plastid
GSMUA_Achr3P19110_001
GSMUA_Achr5P28630_001
GSMUA_Achr9P03990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00350.1	GSMUA_Achr3P19110_001	AT1G75630.2	22897245
ATCG00350.1	GSMUA_Achr5P28630_001	AT2G28800.1	15988575
ATCG00350.1	GSMUA_Achr9P03990_001	AT2G28800.1	15988575
ATCG00350.1	GSMUA_Achr3P12740_001	AT4G15510.1	23221595
ATCG00350.1	GSMUA_Achr3P12740_001	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041230	Potato	plastid	55.09	81.11
TraesCS1B01G189100.1	Wheat	cytosol, plasma membrane, plastid	52.83	74.87
HORVU6Hr1G037020.1	Barley	plastid	52.08	62.73
ATCG00350.1	Thale cress	cytosol, plasma membrane, plastid	94.34	33.33
GSMUA_AchrUn_...	Banana	cytosol, golgi	0.75	0.04
CDY43223	Canola	extracellular	0.0	0.0
KRG88966	Soybean	cytosol, plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009522	GO:GO:0009534
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0018298
GO:GO:0019538	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114
EnsemblPlantsGene:GSMUA_AchrUn_randomG21790_001	EnsemblPlants:GSMUA_AchrUn_randomP21790_001	EnsemblPlants:GSMUA_AchrUn_randomT21790_001	InterPro:IPR036408	UniProt:M0UB87	PFAM:PF00223
PRINTS:PR00257	ScanProsite:PS00419	InterPro:PSI_PsaA	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_CS	InterPro:PSI_PsaA/B_sf
PANTHER:PTHR30128	PANTHER:PTHR30128:SF8	SUPFAM:SSF81558	TMHMM:TMhelix	UniParc:UPI0002960912	:

Description

Photosystem I P700 chlorophyll a apoprotein A1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG21790_001]

Coordinates

chrchrUn_random:-:106330569..106331693

Molecular Weight (calculated)

28683.7 Da

IEP (calculated)

8.751

GRAVY (calculated)

0.336

Length

265 amino acids

Sequence
(BLAST)

001: LAIDYGTQLS LFTHHMWIGG FLIVGAAAHA AIFMVRDYDP TTRYNDLLDR VLRHRDAIIS HLNWAWRPQD MFSDTAIQLQ PIFAQWVQNT HALAPGITAP
101: GATASTSLTW GGGELVAVGG KVALLPIPLG TADFLVHHIH AFTIHVTVLI LLKGVLFARS SRLIPDKANL GFRFPCDGPG RGGTCQSDVW GTISDQGVVT
201: HITGGNFAQS SITINGWLRD FLWAQASQPR ALSIVQGRAV GVTHYLLGGI ATTWAFFLAR IIAVG

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [cytosol,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.