Factsheet for HORVU6Hr1G037020.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G002500.2
HORVU3Hr1G013690.6
HORVU4Hr1G019840.1
HORVU5Hr1G022750.1	plastid
HORVU5Hr1G036250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00350.1	HORVU1Hr1G002500.2	AT1G75630.2	22897245
ATCG00350.1	HORVU4Hr1G019840.1	AT1G75630.2	22897245
ATCG00350.1	HORVU5Hr1G036250.1	AT1G75630.2	22897245
ATCG00350.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575
ATCG00350.1	HORVU5Hr1G022750.1	AT4G15510.1	23221595
ATCG00350.1	HORVU5Hr1G022750.1	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G189100.1	Wheat	cytosol, plasma membrane, plastid	74.09	87.17
PGSC0003DMT400041230	Potato	plastid	44.09	53.89
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	62.73	52.08
HORVU3Hr1G004680.1	Barley	cytosol, plasma membrane, plastid	88.18	43.79
HORVU4Hr1G045260.1	Barley	cytosol	19.09	30.66
AGP50755	Barley	plastid	87.27	25.6
HORVU6Hr1G049200.2	Barley	cytosol, plasma membrane, plastid	87.27	25.6
HORVU5Hr1G064640.2	Barley	cytosol, plasma membrane, plastid	86.36	25.33
ATCG00350.1	Thale cress	cytosol, plasma membrane, plastid	84.09	24.67
HORVU5Hr1G064630.2	Barley	plastid	27.73	13.12
HORVU1Hr1G038010.4	Barley	plastid	25.0	12.64
HORVU6Hr1G049190.1	Barley	golgi, mitochondrion, peroxisome, plasma membrane	29.55	8.86
AGP50754	Barley	plastid	29.55	8.86
HORVU0Hr1G029730.1	Barley	endoplasmic reticulum	1.82	3.1
HORVU3Hr1G004700.1	Barley	plastid	4.55	2.21
HORVU4Hr1G045300.1	Barley	cytosol	2.27	0.89
HORVU2Hr1G022470.1	Barley	cytosol, plastid	0.0	0.0
HORVU0Hr1G034550.1	Barley	cytosol	0.0	0.0
HORVU4Hr1G045310.1	Barley	extracellular	0.0	0.0
CDY43223	Canola	extracellular	0.0	0.0
KRG88966	Soybean	cytosol, plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	UniProt:A0A287TXV6	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009579
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:HORVU6Hr1G037020
EnsemblPlants:HORVU6Hr1G037020.1	InterPro:IPR036408	PFAM:PF00223	PRINTS:PR00257	ScanProsite:PS00419	InterPro:PSI_PsaA
InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_CS	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF8	SUPFAM:SSF81558
TMHMM:TMhelix	UniParc:UPI000B460A40	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:185087929..185088839

Molecular Weight (calculated)

24116.2 Da

IEP (calculated)

9.447

GRAVY (calculated)

0.424

Length

220 amino acids

Sequence
(BLAST)

001: QPIFAQWVQN IHATAPGVTA PGATTSTSLT WGGGELVVVG GKVALLPIPL GTADFLVHHI HAFTIHVTVL IFLKGVLFAR SSRLIPDKAN LGFRFPCDGP
101: GRGGTCQVSA WDHVFLGLFW MHNAISVVIF HFSWKMQSDV WGTISDQGVV THITGGNFAQ SSITINGWLR DFLWAQASQV IRSYGSSLSA YGIFFLRCSF
201: CLGLQFNVFI QRSWLLARTH

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.